PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490565.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family CO-like
Protein Properties Length: 412aa    MW: 44918.2 Da    PI: 5.9128
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490565.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.3e-06544639
        zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    C+ ++e +   +C+++   lC +C  + H+       H++
  XP_004490565.1  5 CDFCGERRSLVYCRSDAASLCLSCDRKVHSAnalskrHSR 44
                    *****************************65667777765 PP
2zf-B_box18.44.6e-064688440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                     +C++++ ++++  C + ++ lC++C    H g       H+++
  XP_004490565.1 46 LVCERCNLQPAHVRCDEEKVSLCQNCDWLAH-GtdpssstHKRQ 88
                    68************************99999.547777777765 PP
3CCT64.43.4e-22355398144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a++RYkeK+k+RkF+Kk+rY+sRKa+A+ R+RvKGrFvk+ 
  XP_004490565.1 355 RSNAVMRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAG 398
                     899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000214.36E-7447No hitNo description
SMARTSM003361.8E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.115447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1724390IPR000315B-box-type zinc finger
CDDcd000210.00234790No hitNo description
SMARTSM003360.554890IPR000315B-box-type zinc finger
PfamPF062034.6E-17355397IPR010402CCT domain
PROSITE profilePS5101715.477355397IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGCLCDFCGE RRSLVYCRSD AASLCLSCDR KVHSANALSK RHSRTLVCER CNLQPAHVRC  60
DEEKVSLCQN CDWLAHGTDP SSSTHKRQSM NCYCGCPSAA ELSSIWSFFS DIPSMGEACE  120
QQLRLMSISE KNGESASAPL ESQCVSVIAQ VADLPSRGKS KVGTSPIPES SAEPHIQDKA  180
PEPSNECMPK LLCPSKKSPA LCEDDNLYDD FNIDEMDLEL ENYKELFGVD LSHTDEFLEK  240
GGIDSLFETI DMYASAGDLN CQGAVAAEGS SAGFVGAIQP ACSNTASADS ILSSKTEPIL  300
NFTARQSQSN ISFSGGTKDA SAGNSQDCGG SAMHVSGEPP WRVPFAESST QSANRSNAVM  360
RYKEKKKNRK FDKKVRYASR KARADVRKRV KGRFVKAGES YDYDPLNETR SF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490565.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490565.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_004490566.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_027187675.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_027187676.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-131COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1S2XMH50.0A0A1S2XMH5_CICAR; zinc finger protein CONSTANS-LIKE 9-like
STRINGXP_004490565.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-110B-box type zinc finger protein with CCT domain