PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490456.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 300aa    MW: 32245.6 Da    PI: 6.5
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43.1e-16211246134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ +g
  XP_004490456.1 211 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRG 246
                     *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.2E-1174109IPR010399Tify domain
PROSITE profilePS5132014.88374109IPR010399Tify domain
PfamPF062001.5E-1278108IPR010399Tify domain
PfamPF062036.4E-15143185IPR010402CCT domain
PROSITE profilePS5101712.411143185IPR010402CCT domain
SMARTSM004011.8E-14205258IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-12209262No hitNo description
CDDcd002024.63E-14210254No hitNo description
Gene3DG3DSA:3.30.50.101.8E-15210252IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.0E-14211246IPR000679Zinc finger, GATA-type
PROSITE patternPS003440211238IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.816211264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEPSIYGHSH PLNITAESDD GSGPDNTIEG HHHIQYETHG LNDGGVGGGV VVDEGTSDAV  60
YGHGGGNSEL ALQSFDDSSQ LTLSFRGQVY VFDSVTPDKV QSVLLLLGGC ELPQAGTTCV  120
DAVPQQSQRG STEFPTKCSL PQRAASLIRF RQKRKERCFE KKVRYGVRQE VALRMHRNKG  180
QFTSSKKQDG ANSCGTDQDS GQDDSQSVTF CTHCGISSKS TPMMRRGPSG PRSLCNACGL  240
FWANRGALRD LSKRHPELSI VPAEHVDQGN GSDCGTAIIP AHNNLAAFSE NDNQALVADR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490456.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490456.10.0GATA transcription factor 25-like
SwissprotQ9LRH61e-85GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A1S2XJV40.0A0A1S2XJV4_CICAR; GATA transcription factor 25-like
STRINGXP_004490456.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.26e-81GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]