PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490274.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 297aa    MW: 33431.8 Da    PI: 6.6811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490274.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14117163354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L +++e++k L
  XP_004490274.2 117 KSHSEAERRRRERINNHLAKLRTLLPNT-----TKTDKASLLGEVIEHVKLL 163
                     79*************************9.....8***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.837114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-12117163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-14118182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-15118172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-13120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.43E-5127166No hitNo description
CDDcd048734.72E-7200272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKKEEDQGQC SSQNIKTYEE QVFLQQQNSN HMNMFGRGKR LMFPEVSPIL QTQPLFLVPP  60
TTPSSLLPYT SFFNSRVPIP SSSHTFVGNP YGLIQPEYGS KISAQEMMEA KAVAASKSHS  120
EAERRRRERI NNHLAKLRTL LPNTTKTDKA SLLGEVIEHV KLLKRQTSLI AETSEVPTES  180
DELIVNGGDD QNGKFMIKAS LCCEDRSDLL PDLINTLKSL RLRTLKAEIT TLSGRVKNVL  240
FVTESEDSDY SNGEEQQYAC INSIQEALKA VMEKSTDESI SGNVKRQRTN NIIQYEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490274.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490274.20.0transcription factor bHLH30-like
SwissprotQ9S7Y12e-77BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1S2XJG70.0A0A1S2XJG7_CICAR; transcription factor bHLH30-like
STRINGXP_004490274.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]