PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490242.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | SBP | ||||||||
Protein Properties | Length: 371aa MW: 42716.2 Da PI: 6.7539 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.3 | 1.8e-42 | 114 | 190 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rhkvC+vhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q XP_004490242.1 114 ICQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGVEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQ 190 5**************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.8E-34 | 110 | 176 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.83 | 112 | 189 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.16E-40 | 113 | 195 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.3E-32 | 115 | 188 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MESWSYIPEE RSYLFSDEMD FSLDAFMMRS RKPFIEFENK SSCNFERDST FGEEDSDSKH 60 LSSLDESKTH DSSLIDLKLG RLDRDVKAFT STPIHQTALS KKARTSRLPA HAPICQVYGC 120 NMDLSSSKDY HKRHKVCDVH SKTAKVIVNG VEQRFCQQCS RFHLLAEFDD GKRSCRRRLA 180 GHNERRRKPQ FDYMTNKQHK ILQSYQGTKY LESSIQNIPH FDFQDIFQSG HIKLEEEPNF 240 SPQLASPATL GHELSSRALS LLSSPSQNPS RHAAENPLTN SLIYRGIRTQ DNNDQVSETP 300 LNISSVDKHN QNESFPFSDD ICETSESMNI KSEHGVTVDL FQLSSHLQRV EQQRNSVLVK 360 WXNEDYCFPT V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-30 | 114 | 188 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490242.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR932968 | 1e-58 | CR932968.2 Medicago truncatula chromosome 5 clone mth2-8e17, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490242.1 | 0.0 | LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A1S2XLV4 | 0.0 | A0A1S2XLV4_CICAR; LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 6 | ||||
STRING | XP_004490242.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 6e-64 | SBP family protein |