PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004490239.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MIKC_MADS

Protein Properties

Length: 230aa MW: 26839.3 Da PI: 8.3188

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004490239.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100	9.4e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_004490239.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.487	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-41	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.32E-44	2	78	No hit	No description
SuperFamily	SSF55455	9.94E-35	2	92	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-33	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.9E-21	84	161	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.22	89	176	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG 60 SSMAKTLERY QRSSYGALEV HHPQEHETQK RRYQEYLKLK SKVETLQQTQ RNILGEKLEH 120 LDINELEQLE SQLDSSLRQI RWKKTQQMLD QLSDLQRKLE EINVALQPTW EAREQNAHYS 180 CHPPQSEEYY EKAHSNTLQI GCNSSGLNES REVIGSSAHN VSDFMHGWMT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-20	1	88	1	80	MEF2C
5f28_B	1e-20	1	88	1	80	MEF2C
5f28_C	1e-20	1	88	1	80	MEF2C
5f28_D	1e-20	1	88	1	80	MEF2C
6byy_A	1e-20	1	86	1	93	MEF2 CHIMERA
6byy_B	1e-20	1	86	1	93	MEF2 CHIMERA
6byy_C	1e-20	1	86	1	93	MEF2 CHIMERA
6byy_D	1e-20	1	86	1	93	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004490239.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM236433	6e-50	HM236433.1 Gossypium hirsutum MADS17 mRNA, complete cds.
GenBank	JF271884	6e-50	JF271884.1 Gossypium hirsutum SEPALLATA1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027187420.1	1e-169	MADS-box protein CMB1-like isoform X2
Swissprot	Q8LLR2	1e-92	MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBL	A0A3Q7YCG7	1e-167	A0A3Q7YCG7_CICAR; MADS-box protein CMB1-like isoform X2
STRING	XP_004490237.1	1e-167	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.2	4e-68	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]