PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490236.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 237aa MW: 27669.4 Da PI: 7.4302 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.5 | 1.2e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ XP_004490236.1 9 KRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIVFSHNGKLFEYST 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.847 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-33 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.17E-38 | 2 | 73 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.1E-29 | 83 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.535 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGRSKVQLKR IENKINRQVT FSKRRTGLLK KANEISVLCD AEVALIVFSH NGKLFEYSTD 60 SCMEKILERH ERYGYAERLL VTNDSETQEN WSIEYTRLKA KIDLLQRNHR QYLGEDLASM 120 SLKELQCLEQ QLDTGLKSIR TRRNQVLYEA ISELQKKEKG IQEQNNMLTK EIKEKEKAVA 180 QEAAAQWDQP NYRVDTSFLL QDPLPVLNMG GNYREGAQEL GRNELDLTLE PQYYYNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 73 | 1 | 72 | MEF2C |
5f28_B | 1e-20 | 1 | 73 | 1 | 72 | MEF2C |
5f28_C | 1e-20 | 1 | 73 | 1 | 72 | MEF2C |
5f28_D | 1e-20 | 1 | 73 | 1 | 72 | MEF2C |
6byy_A | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 1e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490236.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT051745 | 0.0 | BT051745.1 Medicago truncatula clone MTYF5_F6_F7_F81G-O-5 unknown mRNA. | |||
GenBank | BT149143 | 0.0 | BT149143.1 Medicago truncatula clone JCVI-FLMt-16M7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490236.1 | 1e-175 | truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q6E6S7 | 1e-117 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A1S2XJD9 | 1e-174 | A0A1S2XJD9_CICAR; truncated transcription factor CAULIFLOWER A-like | ||||
STRING | XP_004490236.1 | 1e-174 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-98 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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