PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004490226.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

YABBY

Protein Properties

Length: 173aa MW: 19066.9 Da PI: 9.8206

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004490226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	148.8	5.1e-46	15	158	6	163
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 s +++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l ++ ++ +s+ +++l ++ l ++ ++ k+ +a++s ss+ XP_004490226.1 15 SDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTT------RPPTSK-NHTLVDHTLTLQG-------VYSCKKGQATSSSSSSP 95 5679********************************9865333......333332.2333333332222.......22333333333333323 PP YABBY 101 lsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 +++++ +p++ p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa f XP_004490226.1 96 -TTSTESLSPKAAPfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPQIPHREAFSAAAKNWARF 158 .34455556666666*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.2E-55	16	158	IPR006780	YABBY protein
SuperFamily	SSF47095	9.56E-9	101	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.9E-5	112	157	IPR009071	High mobility group box domain
CDD	cd01390	9.60E-6	119	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MNNEEKLTMD LIPPSDQHLC YVRCNFCNTV LAVGIPCKRL LDTVTVKCGH CSNLSFLTTR 60 PPTSKNHTLV DHTLTLQGVY SCKKGQATSS SSSSPTTSTE SLSPKAAPFV VKPPEKKHRL 120 PSAYNRFMKE EIQRIKAANP QIPHREAFSA AAKNWARFIP NSPTSSIPAS KIE

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269\|PubMed:14729915}.
UniProt	Transcription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269\|PubMed:10225997, ECO:0000269\|PubMed:10225998, ECO:0000269\|PubMed:10535738, ECO:0000269\|PubMed:11714690, ECO:0000269\|PubMed:15598802, ECO:0000269\|Ref.10}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004490226.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269\|PubMed:10225998, ECO:0000269\|PubMed:15598802}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF806036	1e-162	KF806036.1 UNVERIFIED: Pisum sativum crabs claw protein-like mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004490226.1	1e-126	protein CRABS CLAW-like isoform X2
Swissprot	Q76EJ0	1e-62	YABDL_ORYSJ; Protein DROOPING LEAF
Swissprot	Q8L925	8e-63	CRC_ARATH; Protein CRABS CLAW
TrEMBL	A0A1S2XJD2	1e-125	A0A1S2XJD2_CICAR; protein CRABS CLAW-like isoform X2
STRING	XP_004490225.1	1e-111	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10259	30	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	8e-64	YABBY family protein

Publications ? help Back to Top
Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development. Ann. Bot., 2014. 114(7): p. 1535-44 [PMID:24989787] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776] Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation. Nat Commun, 2017. 8(1): p. 1125 [PMID:29066759] Yamaguchi N, et al. Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy. Nat Commun, 2018. 9(1): p. 5290 [PMID:30538233]