PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490147.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 522aa    MW: 57331.1 Da    PI: 9.5063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023450472123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C+k F++   L  H r+H
  XP_004490147.1 450 HECPICNKIFKSGQALGGHKRSH 472
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-5232No hitNo description
Gene3DG3DSA:3.30.160.606.1E-5229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.0062629IPR007087Zinc finger, C2H2
SMARTSM003550.65628IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972633IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473115142IPR007087Zinc finger, C2H2
SMARTSM003550.21115137IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.2E-8116137No hitNo description
PfamPF139125.5E-7117139IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576676.2E-8445472No hitNo description
PfamPF139126.1E-11450472IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64450472IPR007087Zinc finger, C2H2
SMARTSM003550.015450472IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280452472IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEEKKFVCKF CSRKFACGKS LGGHIRTHMM NEHNSVKANE EKRINANSNF NVSVNVNGNG  60
NAMFKFDDGR KRKRDFGSSS GGVGGDDVIY GLRENPKKTT RFVHSNVAAT IQMEKFCKEC  120
GKGFPSLKAL CGHMACHSEK DKGINRIVES SSEKQKLVMD SQSDTETSVQ TRRSKRMKFK  180
NVGSGGGSNN NHQPSSSSLH WGNCSSSVSE VEQEQEDVAL CLMMLSRDST YKGRFALVTE  240
SSDNNSVVLE AKSPSVDTKF AVNRGKNKAF EVVEKKLNKD VKLKSVGIGY VSDNSNSEDF  300
NYGPKKVDSD ESSDDFFMNE KKSKKVGFGE HEYESSKKIM SRERSKNSNE FKKLVLDDSV  360
GKILVGSSSM KNGYSNDEMY DENGGKELKI ERESFSSSDD SAYESDENST DSDSYQAPKT  420
QTNKNLIGKK TKYTSKKGKK KMKSKKSKEH ECPICNKIFK SGQALGGHKR SHFVGGSDDT  480
LVIRPSGGGG GSGGGRARAP PVAQAPPVPC FIDLNLPAPV DE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467856e-64AC146785.12 Medicago truncatula clone mth2-4h4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490147.10.0uncharacterized protein LOC101498129
TrEMBLA0A1S2XJ660.0A0A1S2XJ66_CICAR; uncharacterized protein LOC101498129
STRINGXP_004490147.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-59C2H2-like zinc finger protein