PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490147.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 522aa MW: 57331.1 Da PI: 9.5063 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 450 | 472 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k F++ L H r+H XP_004490147.1 450 HECPICNKIFKSGQALGGHKRSH 472 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.35E-5 | 2 | 32 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.1E-5 | 2 | 29 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 0.0062 | 6 | 29 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.65 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.972 | 6 | 33 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.473 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.2E-8 | 116 | 137 | No hit | No description |
Pfam | PF13912 | 5.5E-7 | 117 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.2E-8 | 445 | 472 | No hit | No description |
Pfam | PF13912 | 6.1E-11 | 450 | 472 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.64 | 450 | 472 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 450 | 472 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 452 | 472 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MEEKKFVCKF CSRKFACGKS LGGHIRTHMM NEHNSVKANE EKRINANSNF NVSVNVNGNG 60 NAMFKFDDGR KRKRDFGSSS GGVGGDDVIY GLRENPKKTT RFVHSNVAAT IQMEKFCKEC 120 GKGFPSLKAL CGHMACHSEK DKGINRIVES SSEKQKLVMD SQSDTETSVQ TRRSKRMKFK 180 NVGSGGGSNN NHQPSSSSLH WGNCSSSVSE VEQEQEDVAL CLMMLSRDST YKGRFALVTE 240 SSDNNSVVLE AKSPSVDTKF AVNRGKNKAF EVVEKKLNKD VKLKSVGIGY VSDNSNSEDF 300 NYGPKKVDSD ESSDDFFMNE KKSKKVGFGE HEYESSKKIM SRERSKNSNE FKKLVLDDSV 360 GKILVGSSSM KNGYSNDEMY DENGGKELKI ERESFSSSDD SAYESDENST DSDSYQAPKT 420 QTNKNLIGKK TKYTSKKGKK KMKSKKSKEH ECPICNKIFK SGQALGGHKR SHFVGGSDDT 480 LVIRPSGGGG GSGGGRARAP PVAQAPPVPC FIDLNLPAPV DE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490147.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146785 | 6e-64 | AC146785.12 Medicago truncatula clone mth2-4h4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490147.1 | 0.0 | uncharacterized protein LOC101498129 | ||||
TrEMBL | A0A1S2XJ66 | 0.0 | A0A1S2XJ66_CICAR; uncharacterized protein LOC101498129 | ||||
STRING | XP_004490147.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1101 | 30 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 2e-59 | C2H2-like zinc finger protein |