PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490111.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 262aa    MW: 29795.6 Da    PI: 7.1246
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-111563148
                     TSSS-HHHHHHHHHHHH.HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavk.qlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed++l+ +v+ q+G  +W + +++ g+ R++k+c +rw +yl
   XP_004490111.1 15 KGPWTSKEDKKLIPYVTtQHGHQNWPSLPARAGLQRCGKSCGLRWINYL 63
                     79*************9549**99************************97 PP
2Myb_DNA-binding476.1e-1569112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eEd  +++++ +lG++ W+tIa  ++ +Rt++++k++ ++
   XP_004490111.1  69 RGNFSLEEDHTIIQLHDLLGNK-WSTIATLLP-KRTDNDIKNHCNT 112
                      89********************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-19666IPR009057Homeodomain-like
PROSITE profilePS512949.8461063IPR017930Myb domain
SuperFamilySSF466895.47E-2512109IPR009057Homeodomain-like
SMARTSM007170.00131465IPR001005SANT/Myb domain
PfamPF002491.0E-81563IPR001005SANT/Myb domain
CDDcd001679.09E-51763No hitNo description
PROSITE profilePS5129419.61264118IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-2067116IPR009057Homeodomain-like
SMARTSM007176.1E-1268116IPR001005SANT/Myb domain
PfamPF002493.6E-1369112IPR001005SANT/Myb domain
CDDcd001671.13E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSTRRPCCEK VGLKKGPWTS KEDKKLIPYV TTQHGHQNWP SLPARAGLQR CGKSCGLRWI  60
NYLKPYMKRG NFSLEEDHTI IQLHDLLGNK WSTIATLLPK RTDNDIKNHC NTNNKKDKNV  120
NVIKHMAQWV SVRLEAESRL SNLSISSLSN KNNNNAMYNS CSIMLAIDHD DPLSPISKLN  180
FHSIELHVPT NNELCSLSYE SDHSDSNMME TTNGEEIMDG YVLQDDDDIM EAFRDHSFNG  240
HTIMEFNGNG KGNLDTSISF LK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23131165106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490111.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490111.10.0transcription factor MYB106-like
SwissprotQ9LE636e-58MY106_ARATH; Transcription factor MYB106
SwissprotQ9LXF13e-58MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A1S2XJ270.0A0A1S2XJ27_CICAR; transcription factor MYB106-like
STRINGXP_004490111.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.19e-51myb domain protein 106
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]