PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490111.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 29795.6 Da PI: 7.1246 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.9 | 3.5e-11 | 15 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHH.HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavk.qlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed++l+ +v+ q+G +W + +++ g+ R++k+c +rw +yl XP_004490111.1 15 KGPWTSKEDKKLIPYVTtQHGHQNWPSLPARAGLQRCGKSCGLRWINYL 63 79*************9549**99************************97 PP | |||||||
2 | Myb_DNA-binding | 47 | 6.1e-15 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eEd +++++ +lG++ W+tIa ++ +Rt++++k++ ++ XP_004490111.1 69 RGNFSLEEDHTIIQLHDLLGNK-WSTIATLLP-KRTDNDIKNHCNT 112 89********************.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-19 | 6 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.846 | 10 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.47E-25 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0013 | 14 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-8 | 15 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.09E-5 | 17 | 63 | No hit | No description |
PROSITE profile | PS51294 | 19.612 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-20 | 67 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-12 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-13 | 69 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-7 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MSTRRPCCEK VGLKKGPWTS KEDKKLIPYV TTQHGHQNWP SLPARAGLQR CGKSCGLRWI 60 NYLKPYMKRG NFSLEEDHTI IQLHDLLGNK WSTIATLLPK RTDNDIKNHC NTNNKKDKNV 120 NVIKHMAQWV SVRLEAESRL SNLSISSLSN KNNNNAMYNS CSIMLAIDHD DPLSPISKLN 180 FHSIELHVPT NNELCSLSYE SDHSDSNMME TTNGEEIMDG YVLQDDDDIM EAFRDHSFNG 240 HTIMEFNGNG KGNLDTSISF LK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 13 | 116 | 5 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. | |||||
UniProt | Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490111.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490111.1 | 0.0 | transcription factor MYB106-like | ||||
Swissprot | Q9LE63 | 6e-58 | MY106_ARATH; Transcription factor MYB106 | ||||
Swissprot | Q9LXF1 | 3e-58 | MYB16_ARATH; Transcription factor MYB16 | ||||
TrEMBL | A0A1S2XJ27 | 0.0 | A0A1S2XJ27_CICAR; transcription factor MYB106-like | ||||
STRING | XP_004490111.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13536 | 8 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 9e-51 | myb domain protein 106 |
Publications ? help Back to Top | |||
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