PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004490086.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 374aa MW: 42336.3 Da PI: 7.0348 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.7 | 9.7e-21 | 18 | 62 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR+ngi+KKA+ELS+LCd+++ +++fs+ gk XP_004490086.1 18 KRLENTNGRQATYAKRKNGIMKKASELSILCDIDIILLMFSPGGK 62 689**************************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.577 | 10 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-27 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 7.79E-25 | 11 | 63 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-24 | 11 | 104 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-16 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-18 | 20 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-16 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-16 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.048 | 116 | 209 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 374 aa Download sequence Send to blast |
MFESSINPTM GRVKLKIKRL ENTNGRQATY AKRKNGIMKK ASELSILCDI DIILLMFSPG 60 GKPSLCRGRR SNFEEVIAKF AQLTSQERAK RKLESLEALK KTFKKLDHDV NIQEFYGTSS 120 QTVEDLSNQT KLLHNRIAEI QERLSHWTEI EKISSVDELE HMENSLKESL NQINSHKENV 180 QKQQLASLQC NNQFNEMHVP YKMSAQQHLQ SISWMVNGDN QNIVMPEDSN LLLHKDVEGS 240 TSSSFGSYAS YLGSSTKTNN ISNSGQENCV LSDMSNTAPV RLQFNGQFPY IPNNFNIMND 300 VKLQPTTGIN NNNPHENQVD YNVNGNINEA PKQGFDQSNH HGWSSASGPC AVNIFDEHLY 360 HAQPNFPQVH FGFT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 8e-13 | 10 | 101 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 8e-13 | 10 | 101 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_R | 8e-13 | 10 | 101 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_S | 8e-13 | 10 | 101 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_A | 8e-13 | 10 | 101 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_B | 8e-13 | 10 | 101 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_C | 8e-13 | 10 | 101 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_D | 8e-13 | 10 | 101 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_E | 8e-13 | 10 | 101 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_F | 8e-13 | 10 | 101 | 1 | 90 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004490086.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490086.1 | 0.0 | agamous-like MADS-box protein AGL30 | ||||
Swissprot | Q1PFA4 | 3e-94 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A1S2XKM0 | 0.0 | A0A1S2XKM0_CICAR; agamous-like MADS-box protein AGL30 | ||||
STRING | XP_004490086.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2750 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03060.2 | 2e-74 | AGAMOUS-like 30 |
Publications ? help Back to Top | |||
---|---|---|---|
|