PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490084.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 415aa    MW: 47505.1 Da    PI: 6.5089
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490084.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-16107152147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   XP_004490084.1 107 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 152
                      899*****************************.***********996 PP
2Myb_DNA-binding55.61.2e-17159202146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
   XP_004490084.1 159 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 202
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.938102153IPR017930Myb domain
SMARTSM007172.9E-14106155IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-28106200IPR009057Homeodomain-like
PfamPF002498.5E-16107152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-25108160IPR009057Homeodomain-like
CDDcd001677.16E-13110151No hitNo description
PROSITE profilePS5129426.929154208IPR017930Myb domain
SMARTSM007171.8E-14158206IPR001005SANT/Myb domain
PfamPF002492.4E-14159201IPR001005SANT/Myb domain
CDDcd001672.08E-11161201No hitNo description
Gene3DG3DSA:1.10.10.601.5E-20161207IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MTTNNKYPFS SSLSSSSSSS MGMVYEDLGV GSLSLNSNYA VSFPFMRDCL SKRFEEEDDM  60
EGKGCDCSDG NYHNEDLENP NDNNNNNNNN NGSGKEEDNG QSSKCARGHW RPAEDSKLKE  120
LVALYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINRR AFSEEEEERL MQAHRIYGNK  180
WAMIARLFPG RTDNAVKNHW HVIMARKYRE QSSAYRRRRL SQPVYRRMDQ NHQSFVYKEN  240
TNIETESYSS HCFLNGAPLG NSVSIFPYGA SFQHGGHGGG VEYGLNVSPH LSGEREPMQG  300
PLHVGFYSQQ APFDFFSGGG RSNINMVEDS FNHYYHHQQQ QQELSNFYHH YPQQYLMTMQ  360
QQNNYNFTNS SSTASRNIGE NNEKVMMINE KADCVEETPP QFFDFLGVGA TTTRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-331072077107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214219YRRRRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490084.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0258401e-149CT025840.2 Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490084.10.0uncharacterized protein LOC101503797
SwissprotQ9SEZ44e-78MY105_ARATH; Transcription factor MYB105
TrEMBLA0A1S2XLI40.0A0A1S2XLI4_CICAR; uncharacterized protein LOC101503797
STRINGXP_004490084.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-76myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]