PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490083.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Dof | ||||||||
Protein Properties | Length: 376aa MW: 42127.4 Da PI: 8.4673 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.5 | 2.6e-37 | 117 | 176 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GG +rn+PvG+grrknk s XP_004490083.1 117 PDKIQPCPRCSSNDTKFCYYNNYNVKQPRHFCKNCQRYWTAGGIMRNMPVGAGRRKNKIS 176 78999****************************************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-28 | 110 | 174 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-30 | 119 | 174 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.689 | 121 | 175 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 123 | 159 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MKLFGRTISL TCNTDVSTND SSSFPREDFS HHSPYSSSSS PLEMNSSTEH QTKRHKEPSR 60 KELTSDDEAS QQTTEDSKSH TSSCLIENPR TPSSETETSQ QNGEKSDMSQ DKSLTKPDKI 120 QPCPRCSSND TKFCYYNNYN VKQPRHFCKN CQRYWTAGGI MRNMPVGAGR RKNKISHFSS 180 ADSNYRQVIP QSTAVLTFGS DSNMSSTLHE EKVNKCYQNF PPQFPFQNHP WNPSMIPHAA 240 FYQQSYPVSF YPNIAYYGGF LPQSWSVQSI STQSCEPNSP TSGKHSRDGE ILFHSNSKKE 300 KLGSESNNNS NSVLIPKTLR IDEPDEAAKS SSTWSKLGIK AFASKGGDKN HVVETSSILQ 360 ANPAALSRSL VFHERI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490083.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490083.1 | 0.0 | cyclic dof factor 3-like | ||||
Swissprot | Q93ZL5 | 5e-58 | CDF2_ARATH; Cyclic dof factor 2 | ||||
TrEMBL | A0A1S2XJ13 | 0.0 | A0A1S2XJ13_CICAR; cyclic dof factor 3-like | ||||
STRING | XP_004490083.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17310 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 1e-60 | cycling DOF factor 2 |
Publications ? help Back to Top | |||
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