PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004490010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 242aa MW: 27137.1 Da PI: 8.9031 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 193.5 | 3.1e-60 | 70 | 207 | 1 | 138 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 svyk+ka l+v +++p+f++++sg++k++r+G +ll++a+a+++ +ydW++kq+f+ls+ e+++l++l++k+sce fhdp+ ++++eGkvrk+lk XP_004490010.1 70 SVYKGKAVLTVSPRAPEFTSMESGSFKISREGCMLLQFAPAVGVHQYDWNRKQVFSLSVNEMGSLISLGAKDSCEIFHDPFIGKGDEGKVRKVLK 164 79********************************************************************************************* PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 vePl dGsG+++nlsv+n++ + nes+ +Pv+kae av++sl+ XP_004490010.1 165 VEPLQDGSGHMFNLSVQNKIENINESIFIPVTKAELAVFNSLF 207 ***************************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54447 | 2.67E-64 | 67 | 241 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene3D | G3DSA:2.30.31.10 | 6.9E-67 | 70 | 227 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.1E-58 | 71 | 205 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MLQTQSYTIT TKPFSVSNHS FTTPIKSIPL RHAGPTFSIS LPQFSVTCHH PQLFQQKPFP 60 PPPQRPQPPS VYKGKAVLTV SPRAPEFTSM ESGSFKISRE GCMLLQFAPA VGVHQYDWNR 120 KQVFSLSVNE MGSLISLGAK DSCEIFHDPF IGKGDEGKVR KVLKVEPLQD GSGHMFNLSV 180 QNKIENINES IFIPVTKAEL AVFNSLFHFI MPCLLGWNAF GSSIKPEVYT ANPKHEDYEW 240 NR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 3e-80 | 70 | 241 | 43 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 3e-80 | 70 | 241 | 43 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 3e-80 | 70 | 241 | 43 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 3e-80 | 70 | 241 | 43 | 219 | p24: plant transcriptional regulator PBF-2 |
4koq_A | 9e-81 | 70 | 225 | 14 | 169 | Single-stranded DNA-binding protein WHY3, chloroplastic |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004490010.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490010.1 | 0.0 | single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X2 | ||||
Swissprot | Q9M9S3 | 6e-87 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A1S2XKF3 | 1e-179 | A0A1S2XKF3_CICAR; single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X2 | ||||
STRING | XP_004490009.1 | 1e-161 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02740.2 | 3e-88 | ssDNA-binding transcriptional regulator |