PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004489931.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB

Protein Properties

Length: 1693aa MW: 185794 Da PI: 5.7991

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004489931.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	5.8e-08	807	848	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++++ +G++ +++Ia+ + ++t +c+++++k XP_004489931.1 807 PWTSEEKEIFLEKYVAFGKD-FRRIASFLD-HKTTADCVEFYYK 848 8***************99.*****.*********98 PP
2	Myb_DNA-binding	25.1	4e-08	1021	1062	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT E +++av +G++ ++ Ia+++ +R+ +qck ++ k XP_004489931.1 1021 DWTDGEKASFLQAVSSFGKD-FAMIAQCVR-TRSQYQCKVFFSK 1062 5***************99.*****.******88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.34E-14	791	851	IPR009057	Homeodomain-like
PROSITE profile	PS51293	16.002	803	854	IPR017884	SANT domain
SMART	SM00717	6.2E-8	804	852	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-5	807	848	IPR009057	Homeodomain-like
Pfam	PF13921	6.8E-5	808	853	No hit	No description
PROSITE profile	PS51293	12.396	1017	1068	IPR017884	SANT domain
SMART	SM00717	5.1E-6	1018	1066	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.8E-10	1019	1068	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-5	1021	1060	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-5	1021	1066	IPR009057	Homeodomain-like
CDD	cd00167	8.27E-4	1022	1060	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1693 aa Download sequence Send to blast
MPLEPIPLDR KNSYRERKQG SSESLGSVAR WRGSSSHHHQ RRAADFRRFA GHHRKQGGWQ 60 LFPEESGHER MLSRSCDKML EEDNCRPSVS RGDGKYGRGN KESKGAFSQR EWRGRSWETT 120 NSSLNTYRRQ IDVNNDRRSV DDMLTYSSHP NSDLLNTWEQ HHMKDQHDKM GGVNRFGSGQ 180 KCDRNNALGT IDWKPLKWTR PGYLSSRESG LSHSISTRSL GGTNSKRSCE GKVGLHHKIA 240 TGVESNSGEA ARLRTSSAPS EEANLRKKPR LNWGEGLAKF EKKKVEGPEV TLNKDDPVSP 300 FNMEPNNFLS PGLVDKNAKV SGFSDCASPA TPSSAACSSS PGTDDKLFGN AANVDSDVSN 360 LRSSPGPGGK SHLQMFSFNL EKVDIDSLSS LGSSLVELPQ SDDPCSVDDS LLRSTTMNKL 420 LTLKAGISKV LEVTETEIDL LETELRSLKS ESEGRFPCSA AVGSLMCYNV NSCEEHVGST 480 DKVARLEPLQ IVSSDEPIVE MAVVEKMPLS TNLLDIHDNC QEDDNDCHGA ARSELVEPLP 540 MMNAVSACDA GYGTCSEDLG RIQSTTVQCL IPCTYRHVAD VSACGDSNSS LEVKDGVDDK 600 SSERFYSSTE NILYDTIISC NKKSAKAAWE EIAKLLPEEC GKKFYDNIGV RSASCSQNGV 660 FIMAKFEEKR RFTRLKERVI TLKFKALHHL WKEDMRLLSV RKHRPKSHKK LELDLRTTSN 720 SHQKKRSSIP FRFPFPGNQL RLVPTSEMIN YTSQLLSESK HEIQRSFLKM PALILDQKDK 780 MNSMFLSSNG LVEDPLAIEK ERAMINPWTS EEKEIFLEKY VAFGKDFRRI ASFLDHKTTA 840 DCVEFYYKNH KSDFFVKIKK KNDDKLGKFC KTKADLMASG IKWDSEVNAS SLDILSAASV 900 MATRIAGNRK MRSGSSLWRG YGNVVNSKGD NIITQRMDSV DVLQDERETV AADVLASICG 960 CISSEATNSC ITSSVDPVED NRIRKCVKVR SVCKQTPMDV TQNIDHETCS DESCGEMDPT 1020 DWTDGEKASF LQAVSSFGKD FAMIAQCVRT RSQYQCKVFF SKTQKRLKLD LMGPKPENVG 1080 SLVNDDVDGG RSDADNACAG QTGSVNGTDT SGTKTDVNQP ASDKNMYHDE SNPVEASNLS 1140 AELDESEETN GKVDHEDVNM VSNPCVIGGE SKLGIDGDAV VLNSSDKSGS VRDQRAIVLS 1200 DSIEIGEVKT SEGEGAVIEL VSDMETVSDS TDIREPSEGK GGVTELVSDM KTIEPCHSYS 1260 VAEGRLVSDV SSRHWGNELE GSTICLVDRD EANTDVVIEL KDNVHDSSTP VNTSLSSVEV 1320 SCSRLGVDVE NEPQLPLEKP HFSGSSVGPL TNANSILQYT DGAAVQYKKT ASQDLLSCDI 1380 QGNRDTSGHN SSSNLGYQLC NPGNLLDDVE PARILQCYDL QVSPKKEVNV NMSCSSSATQ 1440 LTLLSQKIEH DDQYKSLQCF SDSEKTPRDG DVKLFGKILT IPSSTQKPVS SKGNEENCTH 1500 RPKLSSASSS LKLTSLDNAG GKSAILKVEH DDCRGIKNVP VTSYHVENKI HPDCSSLPDS 1560 AILLAKYPAA FSSYSTSAIL EKESLQALAK NDKHHLNGAS SFTTREVNGC NGVIDYQMCR 1620 DSDDQKEVLS DMQRRNGIEA ISSCLQRQGK GMVGTNGVGK ADILVGGSKS VIVSDPEFVG 1680 QTGSVMKEDD LGS

Sequence ? help Back to Top

Protein Sequence Length: 1693 aa Download sequence Send to blast

MPLEPIPLDR KNSYRERKQG SSESLGSVAR WRGSSSHHHQ RRAADFRRFA GHHRKQGGWQ  60
LFPEESGHER MLSRSCDKML EEDNCRPSVS RGDGKYGRGN KESKGAFSQR EWRGRSWETT  120
NSSLNTYRRQ IDVNNDRRSV DDMLTYSSHP NSDLLNTWEQ HHMKDQHDKM GGVNRFGSGQ  180
KCDRNNALGT IDWKPLKWTR PGYLSSRESG LSHSISTRSL GGTNSKRSCE GKVGLHHKIA  240
TGVESNSGEA ARLRTSSAPS EEANLRKKPR LNWGEGLAKF EKKKVEGPEV TLNKDDPVSP  300
FNMEPNNFLS PGLVDKNAKV SGFSDCASPA TPSSAACSSS PGTDDKLFGN AANVDSDVSN  360
LRSSPGPGGK SHLQMFSFNL EKVDIDSLSS LGSSLVELPQ SDDPCSVDDS LLRSTTMNKL  420
LTLKAGISKV LEVTETEIDL LETELRSLKS ESEGRFPCSA AVGSLMCYNV NSCEEHVGST  480
DKVARLEPLQ IVSSDEPIVE MAVVEKMPLS TNLLDIHDNC QEDDNDCHGA ARSELVEPLP  540
MMNAVSACDA GYGTCSEDLG RIQSTTVQCL IPCTYRHVAD VSACGDSNSS LEVKDGVDDK  600
SSERFYSSTE NILYDTIISC NKKSAKAAWE EIAKLLPEEC GKKFYDNIGV RSASCSQNGV  660
FIMAKFEEKR RFTRLKERVI TLKFKALHHL WKEDMRLLSV RKHRPKSHKK LELDLRTTSN  720
SHQKKRSSIP FRFPFPGNQL RLVPTSEMIN YTSQLLSESK HEIQRSFLKM PALILDQKDK  780
MNSMFLSSNG LVEDPLAIEK ERAMINPWTS EEKEIFLEKY VAFGKDFRRI ASFLDHKTTA  840
DCVEFYYKNH KSDFFVKIKK KNDDKLGKFC KTKADLMASG IKWDSEVNAS SLDILSAASV  900
MATRIAGNRK MRSGSSLWRG YGNVVNSKGD NIITQRMDSV DVLQDERETV AADVLASICG  960
CISSEATNSC ITSSVDPVED NRIRKCVKVR SVCKQTPMDV TQNIDHETCS DESCGEMDPT  1020
DWTDGEKASF LQAVSSFGKD FAMIAQCVRT RSQYQCKVFF SKTQKRLKLD LMGPKPENVG  1080
SLVNDDVDGG RSDADNACAG QTGSVNGTDT SGTKTDVNQP ASDKNMYHDE SNPVEASNLS  1140
AELDESEETN GKVDHEDVNM VSNPCVIGGE SKLGIDGDAV VLNSSDKSGS VRDQRAIVLS  1200
DSIEIGEVKT SEGEGAVIEL VSDMETVSDS TDIREPSEGK GGVTELVSDM KTIEPCHSYS  1260
VAEGRLVSDV SSRHWGNELE GSTICLVDRD EANTDVVIEL KDNVHDSSTP VNTSLSSVEV  1320
SCSRLGVDVE NEPQLPLEKP HFSGSSVGPL TNANSILQYT DGAAVQYKKT ASQDLLSCDI  1380
QGNRDTSGHN SSSNLGYQLC NPGNLLDDVE PARILQCYDL QVSPKKEVNV NMSCSSSATQ  1440
LTLLSQKIEH DDQYKSLQCF SDSEKTPRDG DVKLFGKILT IPSSTQKPVS SKGNEENCTH  1500
RPKLSSASSS LKLTSLDNAG GKSAILKVEH DDCRGIKNVP VTSYHVENKI HPDCSSLPDS  1560
AILLAKYPAA FSSYSTSAIL EKESLQALAK NDKHHLNGAS SFTTREVNGC NGVIDYQMCR  1620
DSDDQKEVLS DMQRRNGIEA ISSCLQRQGK GMVGTNGVGK ADILVGGSKS VIVSDPEFVG  1680
QTGSVMKEDD LGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-16	765	853	4	91	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-16	765	853	4	91	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004489931.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004489931.1	0.0	uncharacterized protein LOC101505283 isoform X2
TrEMBL	A0A1S2XK90	0.0	A0A1S2XK90_CICAR; uncharacterized protein LOC101505283 isoform X2
STRING	XP_004489929.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-117	MYB family protein