PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489930.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 1694aa    MW: 185865 Da    PI: 5.7991
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489930.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.8e-08808849346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT eE e++++    +G++ +++Ia+ +  ++t  +c+++++k
   XP_004489930.1 808 PWTSEEKEIFLEKYVAFGKD-FRRIASFLD-HKTTADCVEFYYK 849
                      8*****************99.*********.***********98 PP
2Myb_DNA-binding25.14e-0810221063346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46  
                        WT  E   +++av  +G++ ++ Ia+++  +R+ +qck ++ k
   XP_004489930.1 1022 DWTDGEKASFLQAVSSFGKD-FAMIAQCVR-TRSQYQCKVFFSK 1063
                       5*****************99.*********.********88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.34E-14792852IPR009057Homeodomain-like
PROSITE profilePS5129316.002804855IPR017884SANT domain
SMARTSM007176.2E-8805853IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-5808849IPR009057Homeodomain-like
PROSITE profilePS5129312.39610181069IPR017884SANT domain
SMARTSM007175.1E-610191067IPR001005SANT/Myb domain
SuperFamilySSF466897.8E-1010201069IPR009057Homeodomain-like
PfamPF002491.2E-510221061IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-510221067IPR009057Homeodomain-like
CDDcd001678.28E-410231061No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1694 aa     Download sequence    Send to blast
MPLEPIPLDR KNSYRERKQG SSESLGSVAR WRGSSSHHHQ RRAADFRRFA GHHRKQGGWQ  60
LFPEESGHER MLSRSCDKML EEDNCRPSVS RGDGKYGRGN KESKGAFSQR EWRGRSWETT  120
NSSLNTYRRQ IDVNNDRRSV DDMLTYSSHP NSDLLNTWEQ HHMKDQHDKM GGVNRFGSGQ  180
KCDRNNALGT IDWKPLKWTR PGYLSSRESG LSHSISTRSL GGTNSKRSCE GKVGLHHKIA  240
TGVESNSGEA ARLRTSSAPS EEANLRKKPR LNWGEGLAKF EKKKVEGPEV TLNKDDPVSP  300
FNMEPNNFLS PGLVDKNAKV SGFSDCASPA TPSSAACSSS PGTDDKLFGN AANVDSDVSN  360
LRSSPGPGGK SHLQMFSFNL EKVDIDSLSS LGSSLVELPQ SDDPCSVDDS LLRSTTMNKL  420
LTLKAGISKV LEVTETEIDL LETELRSLKS ESEGRFPCSA AVGSLMCYNV NSCEEHVGST  480
DKVARLEPLQ IVSSDEPIVE MAVVEKMPLS TNLLDIHDNC QEDDNDCHGA ARSELVEPLP  540
MMNAVSACDA GYGTCSEDLG RIQSTTVQCL IPCTYRHVAD VSACGDSNSS LEVKDGVDDK  600
SSERFYSSTE NILYDTIISC NKKSAKAAWE EIAKLLPEEC GKKFYDNIGV RSASCSQNGV  660
FIMAKFEEKR RFTRLKERVI TLKFKALHHL WKEDMRLLSV RKHRPKSHKK LELDLRTTSN  720
SHQKKRSSIP FRFPFPAGNQ LRLVPTSEMI NYTSQLLSES KHEIQRSFLK MPALILDQKD  780
KMNSMFLSSN GLVEDPLAIE KERAMINPWT SEEKEIFLEK YVAFGKDFRR IASFLDHKTT  840
ADCVEFYYKN HKSDFFVKIK KKNDDKLGKF CKTKADLMAS GIKWDSEVNA SSLDILSAAS  900
VMATRIAGNR KMRSGSSLWR GYGNVVNSKG DNIITQRMDS VDVLQDERET VAADVLASIC  960
GCISSEATNS CITSSVDPVE DNRIRKCVKV RSVCKQTPMD VTQNIDHETC SDESCGEMDP  1020
TDWTDGEKAS FLQAVSSFGK DFAMIAQCVR TRSQYQCKVF FSKTQKRLKL DLMGPKPENV  1080
GSLVNDDVDG GRSDADNACA GQTGSVNGTD TSGTKTDVNQ PASDKNMYHD ESNPVEASNL  1140
SAELDESEET NGKVDHEDVN MVSNPCVIGG ESKLGIDGDA VVLNSSDKSG SVRDQRAIVL  1200
SDSIEIGEVK TSEGEGAVIE LVSDMETVSD STDIREPSEG KGGVTELVSD MKTIEPCHSY  1260
SVAEGRLVSD VSSRHWGNEL EGSTICLVDR DEANTDVVIE LKDNVHDSST PVNTSLSSVE  1320
VSCSRLGVDV ENEPQLPLEK PHFSGSSVGP LTNANSILQY TDGAAVQYKK TASQDLLSCD  1380
IQGNRDTSGH NSSSNLGYQL CNPGNLLDDV EPARILQCYD LQVSPKKEVN VNMSCSSSAT  1440
QLTLLSQKIE HDDQYKSLQC FSDSEKTPRD GDVKLFGKIL TIPSSTQKPV SSKGNEENCT  1500
HRPKLSSASS SLKLTSLDNA GGKSAILKVE HDDCRGIKNV PVTSYHVENK IHPDCSSLPD  1560
SAILLAKYPA AFSSYSTSAI LEKESLQALA KNDKHHLNGA SSFTTREVNG CNGVIDYQMC  1620
RDSDDQKEVL SDMQRRNGIE AISSCLQRQG KGMVGTNGVG KADILVGGSK SVIVSDPEFV  1680
GQTGSVMKED DLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C4e-16766854491NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D4e-16766854491NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489929.10.0uncharacterized protein LOC101505283 isoform X1
RefseqXP_004489930.10.0uncharacterized protein LOC101505283 isoform X1
TrEMBLA0A1S2XL560.0A0A1S2XL56_CICAR; uncharacterized protein LOC101505283 isoform X1
STRINGXP_004489929.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-119MYB family protein