PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489860.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 251aa    MW: 28751.7 Da    PI: 9.5364
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.7e-1387133455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR++i + f  L  l+P +     kK++Ka++L+ A++++k+Lq
  XP_004489860.1  87 DHIIAERKRRQNISQHFIALSALIPGL-----KKMDKASVLRDAIKHVKQLQ 133
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.30783132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1886151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1787148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-1188133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-1288137No hitNo description
SMARTSM003535.5E-1589138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSNSSGDVNN FERPSKTLKT NPSNTGYPSS QREDSSFPYI LYFNNEDHGK SLTSKGSLEN  60
QRKETKRNIE ENKKTDSITR SSQHNKDHII AERKRRQNIS QHFIALSALI PGLKKMDKAS  120
VLRDAIKHVK QLQEQVKLLE EKNQRLQNVE YVVYVESNSG NGKRSLPEVE ARMSEKNVLI  180
RIHCEKQKGV LVNIIKEIEN LNLSITSATS LLFGTTKLLD ITVIAEMDEE FSLCVQELVR  240
NLRVSFLQFM E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489860.10.0transcription factor bHLH18-like
TrEMBLA0A1S2XIH10.0A0A1S2XIH1_CICAR; transcription factor bHLH18-like
STRINGXP_004489860.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-48bHLH family protein