PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489732.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 359aa    MW: 39144.1 Da    PI: 7.236
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489732.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.3e-20148197255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa a+++a+++++g
  XP_004489732.1 148 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAAIAYDEAALRFRG 197
                     7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-32148206IPR001471AP2/ERF domain
PfamPF008471.7E-13148197IPR001471AP2/ERF domain
PROSITE profilePS5103225.119148205IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-22148206IPR016177DNA-binding domain
SMARTSM003803.8E-37148211IPR001471AP2/ERF domain
PRINTSPR003672.9E-11149160IPR001471AP2/ERF domain
CDDcd000184.66E-16156207No hitNo description
PRINTSPR003672.9E-11171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSLLTVANQR GLGEFTGFTV KRGGDGGSSS GASQSFNDLK NQEEEGGVRS RMQGYNGDRE  60
LIEMVSALTH VSSSQMMVQT IGHKRERDHD EEISSSSNHI IQQPTLPRIF TTVMVPSQTS  120
VGSEGPSSIG GSTATSATTE EGGEKRRRYR GVRQRPWGKW AAEIRDPHKA ARVWLGTFDT  180
AEAAAIAYDE AALRFRGSRA KLNFPENVRA IPTPTLTTTT TPQPQLRSHS TAFSPFNGQP  240
DLVRDYLEYS QILQSSGDFQ LQQQQQQSNL FQQWYYNSQL AQLQSPSLLL SSSSLSSSSS  300
FSTSTQLSSS SDSFPLFNSQ EMSFLRPSNN HPPGGSRGGG LGFPPTTWSD ISGCPPPYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-25147208163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148EKRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489732.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353006e-54AC235300.1 Glycine max strain Williams 82 clone GM_WBb0063F04, complete sequence.
GenBankKT0310926e-54KT031092.1 Glycine max clone HN_CCL_185 AP2-EREBP transcription factor (Glyma16g27950.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489732.10.0ethylene-responsive transcription factor ERF110-like
TrEMBLA0A1S2XI630.0A0A1S2XI63_CICAR; ethylene-responsive transcription factor ERF110-like
STRINGXP_004489732.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-21related to AP2 6