PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489718.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family G2-like
Protein Properties Length: 368aa    MW: 41874.4 Da    PI: 8.0585
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489718.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.75.3e-333892155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+Wt++LHerF+eav+qLGG++kAtPkt+l+lm+++gLtl+h+kSHLQkYR+
  XP_004489718.1 38 KPRLKWTTDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRI 92
                    79****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.2873595IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-303693IPR009057Homeodomain-like
SuperFamilySSF466891.72E-163793IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-233893IPR006447Myb domain, plants
PfamPF002497.7E-104091IPR001005SANT/Myb domain
PfamPF143791.8E-25139185IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MYYNHHQQAR NMHALRMQIQ GGGNGSGDSG LVLSTDAKPR LKWTTDLHER FIEAVNQLGG  60
ADKATPKTVL KLMGIPGLTL YHLKSHLQKY RISKTMNGQT NTGSSKIALT TEVSSRMSEA  120
SGIHMKHLSI GLQTNKNSEI NEAFNMQMEV QRRLHEQLEV QKHLQLRIEA QGKYLQSVLE  180
KAKETLGTQN LGLKELHVHW PQQTREDETI DYSMGSFLTN SEDSQRDQEM HNKGMKLGVS  240
KECVDEPMPL KNDFTLCEKE KENVMFVSSS NHRVLKDGLT TSLLLMNVGG VHEKENMWKR  300
TISKEDLKGE EWKRINNIET NGVQLKLNSD KISQDYRLAN FEVKLDLNSN DASSQCQKFD  360
LNGFSWNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-203794158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-203794158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-203894157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-203894157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-203894157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-203894157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-203794158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-203794158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-203794158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-203794158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-203794158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-203794158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489718.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1395851e-178BT139585.1 Medicago truncatula clone JCVI-FLMt-20F6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489718.10.0myb-related protein 2-like isoform X4
SwissprotQ9SQQ92e-93PHL9_ARATH; Myb-related protein 2
TrEMBLA0A1S2XJT60.0A0A1S2XJT6_CICAR; myb-related protein 2-like isoform X4
STRINGXP_004489714.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.34e-90G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]