PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004489714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | G2-like | ||||||||
Protein Properties | Length: 397aa MW: 45058 Da PI: 8.057 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.6 | 6e-33 | 38 | 92 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LHerF+eav+qLGG++kAtPkt+l+lm+++gLtl+h+kSHLQkYR+ XP_004489714.1 38 KPRLKWTTDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRI 92 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.287 | 35 | 95 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-30 | 36 | 93 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-16 | 37 | 93 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-23 | 38 | 93 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.7E-10 | 40 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.0E-25 | 139 | 185 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MYYNHHQQAR NMHALRMQIQ GGGNGSGDSG LVLSTDAKPR LKWTTDLHER FIEAVNQLGG 60 ADKATPKTVL KLMGIPGLTL YHLKSHLQKY RISKTMNGQT NTGSSKIALT TEVSSRMSEA 120 SGIHMKHLSI GLQTNKNSEI NEAFNMQMEV QRRLHEQLEV QKHLQLRIEA QGKYLQSVLE 180 KAKETLGTQN LGTMGLDDAK VQLSKFTSRV SNENLDSKFL GLKELHVHWP QQTREDETID 240 YSMGSFLTNS EDSQRDQEMH NKGMKLGVSK ECVDEPMPLK NDFTLCEKEK ENVMFVSSSN 300 HRVLKDGLTT SLLLMNVGGV HEKENMWKRT ISKEDLKGEE WKRINNIETN GVQLKLNSDK 360 ISQDYRLANF EVKLDLNSND ASSQCQKFDL NGFSWNC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-20 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-20 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-20 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-20 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004489714.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139585 | 0.0 | BT139585.1 Medicago truncatula clone JCVI-FLMt-20F6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004489714.1 | 0.0 | myb-related protein 2-like isoform X1 | ||||
Swissprot | Q9SQQ9 | 1e-109 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A1S2XI54 | 0.0 | A0A1S2XI54_CICAR; myb-related protein 2-like isoform X1 | ||||
STRING | XP_004489714.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3852 | 31 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-105 | G2-like family protein |
Publications ? help Back to Top | |||
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