PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489691.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 302aa    MW: 34057 Da    PI: 6.9174
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-173281255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +gr+vAeI+d ++   + r +lg+f taeeAa+a+++a+  l+g
  XP_004489691.1 32 KFVGVRQRP-SGRYVAEIKDTTQ---NIRMWLGTFETAEEAARAYDEAATLLRG 81
                    799******.7*********433...5**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-323295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-263289IPR001471AP2/ERF domain
PfamPF008471.8E-113281IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-183290IPR016177DNA-binding domain
PROSITE profilePS5103218.7553289IPR001471AP2/ERF domain
CDDcd000182.97E-293288No hitNo description
PRINTSPR003674.6E-73344IPR001471AP2/ERF domain
PRINTSPR003674.6E-75571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEIQFEEPKK SLRPKSDNKF KGRIKKYETK NKFVGVRQRP SGRYVAEIKD TTQNIRMWLG  60
TFETAEEAAR AYDEAATLLR GSNTRTNFVT RVSLDSPLAS RIKNLLNNRI KGTKPQQEHM  120
NVKSKTIDHV NTVSDITNST TNRVSTIHDM TISNSANSVS INSTIDGTSA RSVTSTNSLI  180
STNSSNNNVD EKSDSISSIM TIENKRLFDD AYRPDLSNFN ELSSKSNVSC GFDPFFDNFM  240
SNNDGILCDL VELGDSQFER MKVERQISAS LYAINGVHEY METFQDCNEA LWNLPPFCSF  300
LC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-163393667ATERF1
3gcc_A2e-163393667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Involved in early stages of root nodule development. Functions redundantly with ERN1. Is essential with ERN1 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241, ECO:0000269|PubMed:27208242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489691.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1568271e-111AC156827.4 Medicago truncatula chromosome 6 clone mth2-15c17, complete sequence.
GenBankEU0388031e-111EU038803.2 Medicago truncatula ERN2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489691.10.0ethylene-responsive transcription factor ERN2-like
SwissprotA9Y0K81e-124ERN2_MEDTR; Ethylene-responsive transcription factor ERN2
TrEMBLA0A1S2XI360.0A0A1S2XI36_CICAR; ethylene-responsive transcription factor ERN2-like
STRINGXP_004489691.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-24related to AP2 11
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  3. Cerri MR, et al.
    The Symbiosis-Related ERN Transcription Factors Act in Concert to Coordinate Rhizobial Host Root Infection.
    Plant Physiol., 2016. 171(2): p. 1037-54
    [PMID:27208242]