PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004489646.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Dof | ||||||||
Protein Properties | Length: 351aa MW: 39339.9 Da PI: 8.5854 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.8 | 2e-37 | 99 | 158 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s +tkfCy+nny+++qPr+fC++C+ryWt+GG++r vPvG+grrknk+ XP_004489646.1 99 PDKIVQCPRCNSFDTKFCYFNNYNVNQPRHFCRNCHRYWTAGGTMRSVPVGSGRRKNKHI 158 7899******************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 87 | 156 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.5E-31 | 101 | 157 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.801 | 103 | 157 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 105 | 141 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MNCETNNNMF VKDSSIMLFG KKIPVPEYHI PATSQKGCQI QANSTPMNSC SNTKHTGVEI 60 FHTENYEKSK TSSKVNNSIP LEEKKETSNT DQEKVLKKPD KIVQCPRCNS FDTKFCYFNN 120 YNVNQPRHFC RNCHRYWTAG GTMRSVPVGS GRRKNKHIAS QYRHIIATSN GNPIERLDIE 180 NTSRYQNVST DKSIVLKFGQ FGHDTSFREE EESSLCVSSI SNGYTRGNEL SESEYNRSNS 240 LQSYPASQWM VPLNQSWNNA SSIAQSSMQW CHAPMVAVKN ILTPNIPLQF VHGSYWHGNG 300 TVSISSNGCI SPSSTSSNSC CSGNGSPILE KKPDTRVFVP TTLRISDTNL E |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004489646.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004489646.1 | 0.0 | cyclic dof factor 1-like | ||||
TrEMBL | A0A1S2XJN9 | 0.0 | A0A1S2XJN9_CICAR; cyclic dof factor 1-like | ||||
STRING | XP_004489646.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3502 | 31 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26790.1 | 8e-39 | Dof family protein |