PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004489482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 339aa MW: 38550.3 Da PI: 6.5958 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +++ +v +G g+W++++++ g++R++k+c++rw +yl XP_004489482.1 14 RGLWTPEEDAKILAYVSNHGIGNWTLVPKKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47 | 6.1e-15 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T +E+el++ +++ G++ W++Ia++++ gRt++++k++w++ XP_004489482.1 69 SFTLQEEELIISLHEAIGSR-WSLIAKRLP-GRTDNDVKNYWNT 110 79******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.829 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.16E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.04E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.93 | 66 | 116 | IPR017930 | Myb domain |
CDD | cd00167 | 2.00E-10 | 69 | 112 | No hit | No description |
Pfam | PF00249 | 1.1E-13 | 69 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MGRPPCCDKS NVKRGLWTPE EDAKILAYVS NHGIGNWTLV PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHDSF TLQEEELIIS LHEAIGSRWS LIAKRLPGRT DNDVKNYWNT KLRKKLMKMG 120 IDPITHKPVS QVLSDLGSIS SLSKNENLMM KNMIPTRIEP SNSKKNLILE QKQEEQAQPL 180 EHQVQYHQVQ HVLSEVASSS SSTSSSNLTR LNLPNSYSCN KTSSQAQMNP TCSSFDWSEF 240 LHSDDPFMFQ ELQQCDIQRV MSSLNFSSLM QSEGEIFNDS NSKLASEDFD DVDCVASKEY 300 QINNQFDQGH SFSGNSFVDG ILNKDSEIIK ATFPYTFDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004489482.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147499 | 4e-58 | AC147499.5 Medicago truncatula chromosome 6 clone mth2-22h5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004489482.1 | 0.0 | transcription factor MYB35 | ||||
Swissprot | Q9LSI7 | 3e-82 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | A0A1S2XJD0 | 0.0 | A0A1S2XJD0_CICAR; transcription factor MYB35 | ||||
STRING | XP_004489482.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 5e-81 | MYB family protein |
Publications ? help Back to Top | |||
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