PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004489468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | TCP | ||||||||
Protein Properties | Length: 261aa MW: 29757.3 Da PI: 6.9222 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 101 | 2e-31 | 44 | 164 | 2 | 104 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg. 88 g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl+ ak +i+el+ ++ ++++++ ++++s +++ + XP_004489468.1 44 FGGKDRHSKVCTIKGLRDRRVRLSIQTAIHLYDLQDRLGLNQPSKVVDWLLNVAKDEIDELPPLQIPQENFTlgypsfnDDNTSIWKSN----Pk 134 689*************************************************************8888877755543321111111111....12 PP TCP 89 ..............kaaksaakskksqksa 104 +++++++ ++++ ++a XP_004489468.1 135 qvlgemvnhkenwiNKSEEDKVENNDFHDA 164 334444444444444444444444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.44 | 46 | 104 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.5E-29 | 46 | 157 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MINIQKEEDF PLKAKASTIS SSSSSSQWLQ LKDHPRIVRV SRAFGGKDRH SKVCTIKGLR 60 DRRVRLSIQT AIHLYDLQDR LGLNQPSKVV DWLLNVAKDE IDELPPLQIP QENFTLGYPS 120 FNDDNTSIWK SNPKQVLGEM VNHKENWINK SEEDKVENND FHDAQHVLTN QPSFLGLLNN 180 SMPLAYHQLQ PSIRDIHYGI NVVPFPSSLS LSTQQYFPSH VVGAMDMDPR QINYNYDQMM 240 SSSSQNKFSQ SNSTIHHEGG S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-17 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-17 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004489468.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004489468.1 | 0.0 | transcription factor TCP13 | ||||
Refseq | XP_004489469.1 | 0.0 | transcription factor TCP13 | ||||
TrEMBL | A0A1S2XK75 | 0.0 | A0A1S2XK75_CICAR; transcription factor TCP13 | ||||
STRING | XP_004489468.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-46 | plastid transcription factor 1 |