PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004489399.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 496aa MW: 54244.5 Da PI: 4.8768

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004489399.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	134	193	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk+ XP_004489399.1 134 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNF 193 7899*****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	121	191	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-32	136	192	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	138	192	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	140	176	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MLEARDPAIK LFGKTIPVSE ISPGSGDSTG APASSSSGDA VDDVICQNHV SSNTEMDGEE 60 REIDEESKEE EVIECNKEDK TITQSSEKIA DLDTSSRGEE SIKPSNEEEE STLKTAKNKE 120 EQSENSQDKT LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKNCQR YWTAGGAMRN 180 VPVGAGRRKN KNFASHYRQI TIPDVIVQNS QSDSPNGVHH HSVNCNGTAF TFGTDTPLCE 240 SMESVLNIVD KAVTSCPTNG FNRPEELRIS VPYAGEEKSN DHSNKSSDAS TTPTEDATTN 300 SSLEQVVQNS QSFAPQFPHY PSAPWVLPWS PSQWSSQVQS PHAFFPQGIA MPLYPPPAYW 360 GFTMPGAWNN PWLAQPSSPS SATPSSPTLG KHSREENTLT SNDAVGSDEQ SSKGNNKEKS 420 LWVPKTLRID DLGEAQKSSI LTTLGIKNSK PDSICGGGLF KAFQPKGDEK EDTQNSPVLQ 480 ANPAALSRSI SFHETS

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MLEARDPAIK LFGKTIPVSE ISPGSGDSTG APASSSSGDA VDDVICQNHV SSNTEMDGEE  60
REIDEESKEE EVIECNKEDK TITQSSEKIA DLDTSSRGEE SIKPSNEEEE STLKTAKNKE  120
EQSENSQDKT LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKNCQR YWTAGGAMRN  180
VPVGAGRRKN KNFASHYRQI TIPDVIVQNS QSDSPNGVHH HSVNCNGTAF TFGTDTPLCE  240
SMESVLNIVD KAVTSCPTNG FNRPEELRIS VPYAGEEKSN DHSNKSSDAS TTPTEDATTN  300
SSLEQVVQNS QSFAPQFPHY PSAPWVLPWS PSQWSSQVQS PHAFFPQGIA MPLYPPPAYW  360
GFTMPGAWNN PWLAQPSSPS SATPSSPTLG KHSREENTLT SNDAVGSDEQ SSKGNNKEKS  420
LWVPKTLRID DLGEAQKSSI LTTLGIKNSK PDSICGGGLF KAFQPKGDEK EDTQNSPVLQ  480
ANPAALSRSI SFHETS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004489399.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004489399.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A1S2XHE3	0.0	A0A1S2XHE3_CICAR; cyclic dof factor 2-like
STRING	XP_004489399.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	9e-87	cycling DOF factor 2