PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004489395.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ZF-HD | ||||||||
Protein Properties | Length: 322aa MW: 34785.5 Da PI: 7.4484 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.5 | 1.4e-32 | 80 | 137 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNh a+lGgha+DGC+Efmps++++ +++++kCaACgCHRnFHRre+ee XP_004489395.1 80 VVTYKECLKNHVATLGGHALDGCCEFMPSPTATsDDPTSIKCAACGCHRNFHRREPEE 137 689***************************999788******************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.6E-27 | 81 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-21 | 81 | 134 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.2E-28 | 82 | 134 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.766 | 83 | 134 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.09E-19 | 203 | 273 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-30 | 206 | 273 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.6E-27 | 212 | 269 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEVITTPTTN TNTNTNITSL TSSKSPEPES ENPTRIQQLP TNTTTSNITK PITFSNGVLK 60 RLNPNTNNHH NNHHAQPPMV VTYKECLKNH VATLGGHALD GCCEFMPSPT ATSDDPTSIK 120 CAACGCHRNF HRREPEEPIS TVFEYQPHHR HHPPPPLFQS RSPSSPSPPP ISSYPSAPHM 180 LLALSGAGVG LSIPPENTAA PVNLSSPMGT NRKRFRTKFT QEQKEKMHEF AESVGWKMQK 240 RDEETVNGFC NEVGVDRSVL KVWMHNNKNT LGRKLSDHAG DGAGAAVDGV SGGGCAVNEN 300 DENHNNGTNV AASTTNGSSS SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-21 | 213 | 270 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004489395.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC139600 | 0.0 | AC139600.16 Medicago truncatula chromosome 6 clone mth2-20m4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004489395.1 | 0.0 | zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 2e-69 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A1S2XK10 | 0.0 | A0A1S2XK10_CICAR; zinc-finger homeodomain protein 9-like | ||||
STRING | XP_004489395.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 9e-57 | homeobox protein 34 |
Publications ? help Back to Top | |||
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