PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489378.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family AP2
Protein Properties Length: 374aa    MW: 42814.7 Da    PI: 8.152
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489378.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.8e-1564123155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a+ k++g
  XP_004489378.2  64 SRFRGVSRHRWTGRYEAHLWDkLSWNMtqkKKgKQVYLGAYDEEESAARAYDLAAIKYWG 123
                     789******************888865666447*************************98 PP
2AP252.99e-17166217155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  XP_004489378.2 166 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 217
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-1664133IPR016177DNA-binding domain
PfamPF008475.0E-1264123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-1565132IPR001471AP2/ERF domain
SMARTSM003802.5E-2665137IPR001471AP2/ERF domain
PROSITE profilePS5103219.36165131IPR001471AP2/ERF domain
PRINTSPR003671.6E-56677IPR001471AP2/ERF domain
CDDcd000181.69E-1966133No hitNo description
CDDcd000181.36E-24166227No hitNo description
PfamPF008474.1E-12166217IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-18166227IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-18167226IPR001471AP2/ERF domain
SMARTSM003809.1E-27167231IPR001471AP2/ERF domain
PROSITE profilePS5103218.795167225IPR001471AP2/ERF domain
PRINTSPR003671.6E-5207227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEMMIKIEEN KRTSCMSMED YDSQVIAKRR RREPAVAALT SEDNQDQKQH VYQNSTTSTT  60
KRSSRFRGVS RHRWTGRYEA HLWDKLSWNM TQKKKGKQVY LGAYDEEESA ARAYDLAAIK  120
YWGTLTVTNF PVSDYEKQVE LMQTMTKEEY LATLRRKSSG FSRGASKYRG VARHHHNGRW  180
EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGSHA ITNFDLSTYM RWLKSSVGNI  240
SETKLEKMEV PESQTVASLS NYSPIEEPKS LALHSSTYNS DYLNSPQKYA VFEDKAYQIS  300
STKSSSSPTA LGLLFRSTIF RDLVEKNLNI SGDETNGEDT KGQQQQTASD DDELDEIFCD  360
GIGDIPFLKL QKTT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489378.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0066923e-34AP006692.2 Lotus japonicus genomic DNA, chromosome 2, clone: LjT06K23, TM0391, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024641562.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A072U7A00.0A0A072U7A0_MEDTR; AP2 domain transcription factor
STRINGXP_004489378.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-88AP2 family protein