PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489258.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 210aa    MW: 24437.1 Da    PI: 7.6412
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
   XP_004489258.1 16 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding54.62.5e-1769112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
   XP_004489258.1  69 RGNITPEEQLLIMELHEKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 112
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-24966IPR009057Homeodomain-like
PROSITE profilePS5129417.2741163IPR017930Myb domain
SuperFamilySSF466891.46E-3013110IPR009057Homeodomain-like
SMARTSM007177.2E-131565IPR001005SANT/Myb domain
PfamPF002492.7E-161663IPR001005SANT/Myb domain
CDDcd001676.39E-101863No hitNo description
PROSITE profilePS5129425.22664118IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-2567118IPR009057Homeodomain-like
SMARTSM007173.2E-1568116IPR001005SANT/Myb domain
PfamPF002493.0E-1669112IPR001005SANT/Myb domain
CDDcd001674.96E-1273112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDKKPCNSSQ DPEVRKGPWT MEEDLILINY IANHGEGVWN SLAKAAGLKR TGKSCRLRWL  60
NYLRPDVRRG NITPEEQLLI MELHEKWGNR WSKIAKHLPG RTDNEIKNFW RTRIQKHIKQ  120
VDHNQQNSQQ QKSSSSDHHQ TNTSQASNST MVEPMENYSP TSYQATNLEP FPTQFPTIND  180
HNSSCCTNDH NTNNYWSMED IWSMQLLNGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261111822128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489258.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY111051e-159Y11105.1 P.sativum mRNA for Myb-like protein (Myb26).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489258.11e-158myb-related protein 305-like
SwissprotP813917e-93MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A1S2XH151e-157A0A1S2XH15_CICAR; myb-related protein 305-like
STRINGXP_004489258.11e-157(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.17e-86myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]