PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004489051.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

TCP

Protein Properties

Length: 301aa MW: 33438.5 Da PI: 6.9134

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004489051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.3	2.2e-37	17	127	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasnsss 87 g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai++l+++ ++ ++++++ +++ ++ XP_004489051.1 17 RGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKALDWLINKAKPAIDQLAQLppwkptlltKQ------QQNDDVPQNQ--NE 103 689*************************************************************44444333311......1111111111..11 PP TCP 88 g......................k 89 + XP_004489051.1 104 HefhflqnfnsnnnnflpfdtetT 127 122333332222233333433220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.2E-33	18	119	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.861	19	77	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MSGEIVEVDG GHIIRSRGRK DRHSKVCTAK GPRDRRVRLS AHTAIQFYDV QDRLGYDRPS 60 KALDWLINKA KPAIDQLAQL PPWKPTLLTK QQQNDDVPQN QNEHEFHFLQ NFNSNNNNFL 120 PFDTETTSSS PIHFQSYSTH DDLRLSLQQH QNQHVHPHVL FAGNLDGMVA WNSGATIDTG 180 SNNNNNNHHH DDVNSGGGFV FHAATPSPAV FPAVMYGQNQ YLSQRGPLQS SNTSSVRAWI 240 DAPTFVAADH RRGHAVAMSG TGFVSDSFSG FRVPARIGGD EEEEHDGLSD RPSSASSDSR 300 R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-20	24	77	1	54	Putative transcription factor PCF6
5zkt_B	4e-20	24	77	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004489051.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004489051.1	0.0	transcription factor TCP4-like
Swissprot	Q9MAH8	6e-70	TCP3_ARATH; Transcription factor TCP3
TrEMBL	A0A1S2XJ94	0.0	A0A1S2XJ94_CICAR; transcription factor TCP4-like
STRING	XP_004489051.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24162	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	3e-47	TCP family protein

Publications ? help Back to Top
Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]