PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488862.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 300aa    MW: 34351.5 Da    PI: 4.4477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.4e-06171214755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + r RR++i ++ +eL +l+P        K++ ae+L  A  Y++ Lq
  XP_004488862.1 171 VAARERRRKISEKTQELGKLVPGG-----IKMNTAEMLNAASSYVQFLQ 214
                     56799*****************96.....5*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.84E-8162218No hitNo description
PROSITE profilePS5088812.62164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-10165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-11167223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-4172214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTLSTYHSYN YNNNFYLPSS LVQTTNSEII TIQPQEQLSS YVDDESFLFQ SPYVYSNETN  60
YPSSSYQLLD DTTFNENFIS INEIFSNEQY YCPLPCAKRQ KLCHEQIEEE QELLNSTNCF  120
LNEFLTSIEG EPPPPPFYAV QEFNNEGNNI VNVGSDEKKL VKENSVSTQS VAARERRRKI  180
SEKTQELGKL VPGGIKMNTA EMLNAASSYV QFLQAQLRML QLMQTLTKED KEGPSSEDLQ  240
KLVVSPLVQE RLYSEEMCFV PKEFVTAILT NHDDVRSQPT ILKGPKQLIG SQIEKKPKQE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488862.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488862.10.0transcription factor bHLH52-like
TrEMBLA0A1S2XG650.0A0A1S2XG65_CICAR; transcription factor bHLH52-like
STRINGXP_004488862.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-20bHLH family protein