PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004488773.2

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NF-YC

Protein Properties

Length: 924aa MW: 104364 Da PI: 6.2177

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004488773.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	124.7	3.5e-39	726	826	1	98
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++ we+q i++ dfk ++P+ rik+i+kadedv+mi+ ea v++ kace++ leltlrsw+ha+e+kr+tl+k+diaaa+++ fdfl XP_004488773.2 726 QLQMMWENQmqeIQQIVDFKSFTIPIGRIKRIMKADEDVRMIAQEALVVFVKACEMVTLELTLRSWIHAQEKKRNTLQKNDIAAAIKSNYAFDFL 820 89****966667889**************************************************************************** PP NF-YC 93 vdivpr 98 +p XP_004488773.2 821 EYSIPF 826 988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.02E-25	713	820	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.9E-27	743	812	IPR009072	Histone-fold
Pfam	PF00808	6.0E-16	749	811	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence Send to blast
MDKSDQTQEQ QQWQQNVMDF APGASKMAYS SHYPTQGQQQ NVMELAPGAS QMVHSSHYQT 60 QEQQQNGMEF TPGASQMAYS SYYLTQELQQ NVMEFALGAS QMAYHYPAQE QQRQQQNGME 120 FALGASQMAY SSHSPTQEQQ QQLQNVMEFA PGASHMAYSS HFPTQEQQQQ NVMEFAPDAS 180 QMVHSSHYQT QEQLQNVMEF ASGASQMAYS SHYPTQEKQQ NVIEFAPGPS QMAYSDHYPT 240 QEQQQNVTES VPSASQMVNS SHYHTQEKHV MESVPGASQM VNSSHYQTQE MQLQQQNVMK 300 FAAGVGKTAY SSHHPTQEQQ HVMESVPGAS QMSNSSHYQT QEQQLQQHNV MKFAPGVSQM 360 AYSSHHPTQE QQHVMESVPS ASQMVNSSHY QTQEQPLQQQ NGMKFAPGVS QMVYSSQNPT 420 QEPQQQQQHV MESLPGASEM ANSSHYHTQE QQQNGMKSAP VASQMVYSSQ NQTPEQLQER 480 QHLMESVPSA SQMANSSHYQ TQEQPLQQQN GMQFAPGVSQ MAYSSHNPTQ EPQQQQQHVM 540 ESLPGASQMA NSSHYQTQEQ PLQQQNGMKF APGVSQMAYS SHHRTQEQQQ QHVMKSVPGT 600 SQMANSSHHQ TQEQQQQHVM KSVPGTSQIA NSSHHQTQEQ QLQKQNGMKF TPVASQTPYS 660 SQNQTPEQQH VMEVAPGASQ MVYSSNYPTV PMVASGTPSI PDSVLQLAKQ PEKHFHHQQK 720 QQNPQQLQMM WENQMQEIQQ IVDFKSFTIP IGRIKRIMKA DEDVRMIAQE ALVVFVKACE 780 MVTLELTLRS WIHAQEKKRN TLQKNDIAAA IKSNYAFDFL EYSIPFPSGK LKEKAVVIAN 840 DTIPIMDPPS DLPYYHGPPQ YPVGPTGMIM GNPVSQAALN ATQQPQLPVP FMPWLHAYPQ 900 QPQPPLPFMP WPYEHPQQQQ QQPQ

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence Send to blast

MDKSDQTQEQ QQWQQNVMDF APGASKMAYS SHYPTQGQQQ NVMELAPGAS QMVHSSHYQT  60
QEQQQNGMEF TPGASQMAYS SYYLTQELQQ NVMEFALGAS QMAYHYPAQE QQRQQQNGME  120
FALGASQMAY SSHSPTQEQQ QQLQNVMEFA PGASHMAYSS HFPTQEQQQQ NVMEFAPDAS  180
QMVHSSHYQT QEQLQNVMEF ASGASQMAYS SHYPTQEKQQ NVIEFAPGPS QMAYSDHYPT  240
QEQQQNVTES VPSASQMVNS SHYHTQEKHV MESVPGASQM VNSSHYQTQE MQLQQQNVMK  300
FAAGVGKTAY SSHHPTQEQQ HVMESVPGAS QMSNSSHYQT QEQQLQQHNV MKFAPGVSQM  360
AYSSHHPTQE QQHVMESVPS ASQMVNSSHY QTQEQPLQQQ NGMKFAPGVS QMVYSSQNPT  420
QEPQQQQQHV MESLPGASEM ANSSHYHTQE QQQNGMKSAP VASQMVYSSQ NQTPEQLQER  480
QHLMESVPSA SQMANSSHYQ TQEQPLQQQN GMQFAPGVSQ MAYSSHNPTQ EPQQQQQHVM  540
ESLPGASQMA NSSHYQTQEQ PLQQQNGMKF APGVSQMAYS SHHRTQEQQQ QHVMKSVPGT  600
SQMANSSHHQ TQEQQQQHVM KSVPGTSQIA NSSHHQTQEQ QLQKQNGMKF TPVASQTPYS  660
SQNQTPEQQH VMEVAPGASQ MVYSSNYPTV PMVASGTPSI PDSVLQLAKQ PEKHFHHQQK  720
QQNPQQLQMM WENQMQEIQQ IVDFKSFTIP IGRIKRIMKA DEDVRMIAQE ALVVFVKACE  780
MVTLELTLRS WIHAQEKKRN TLQKNDIAAA IKSNYAFDFL EYSIPFPSGK LKEKAVVIAN  840
DTIPIMDPPS DLPYYHGPPQ YPVGPTGMIM GNPVSQAALN ATQQPQLPVP FMPWLHAYPQ  900
QPQPPLPFMP WPYEHPQQQQ QQPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-32	734	825	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004488773.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027190907.1	0.0	putative uncharacterized protein DDB_G0271606
TrEMBL	A0A3Q7YBW1	0.0	A0A3Q7YBW1_CICAR; Uncharacterized protein
STRING	XP_004488856.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	3e-44	nuclear factor Y, subunit C1