PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488555.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 319aa    MW: 36493.9 Da    PI: 6.229
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.6e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv +++ +G ++W++ ++  g+ R++k+c++rw +yl
   XP_004488555.1 13 RGLWSPEEDEKLVTYITTHGHKSWSSLPKFAGLQRCGKSCRLRWTNYL 60
                     788*******************************************97 PP
2Myb_DNA-binding54.92e-1766109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T eE+++++d ++ lG++ W+ Ia++++ gRt++++k++w++
   XP_004488555.1  66 RGSFTSEEEQIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-25563IPR009057Homeodomain-like
PROSITE profilePS5129416.743860IPR017930Myb domain
SuperFamilySSF466893.35E-2910107IPR009057Homeodomain-like
SMARTSM007173.9E-121262IPR001005SANT/Myb domain
PfamPF002491.9E-141360IPR001005SANT/Myb domain
CDDcd001672.54E-101660No hitNo description
PROSITE profilePS5129426.07261115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2664116IPR009057Homeodomain-like
SMARTSM007176.7E-1665113IPR001005SANT/Myb domain
PfamPF002491.8E-1566109IPR001005SANT/Myb domain
CDDcd001672.03E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVHRCCSKQK IKRGLWSPEE DEKLVTYITT HGHKSWSSLP KFAGLQRCGK SCRLRWTNYL  60
RPDLKRGSFT SEEEQIIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL  120
DPQTHNLLSP HKRSSKHNNI SNIHQNSNSI FILTSQIPNA DQTFSSLPNT ILQTPTTVFP  180
KQFQTSFNVL PNKHLDQLCV VEQEQPQNIS NICSNSCIDP SNVEMSNNTE NIIWVSRVND  240
DDDFRGSTCE GGTQAEVHQE KDKICEKGNE VIDNMGSIEM NDGDCLENSN FDFGLLESVL  300
NSEFISHDLD YMDELAWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488555.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494927e-41AC149492.14 Medicago truncatula clone mth2-99d10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488555.10.0transcription factor MYB86 isoform X2
TrEMBLA0A1S2XI880.0A0A1S2XI88_CICAR; transcription factor MYB86 isoform X2
STRINGXP_004488555.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.14e-85myb domain protein 67