PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488477.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 723aa    MW: 80098.4 Da    PI: 9.8626
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.2e-112273246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46
                     + W t+E++ll++av+++G ++W+t+a +++       +  t+ +c  ++++
   XP_004488477.1 22 QVWGTWEELLLACAVNRHGFKDWDTVAMEVQsrtnrptLLATAHHCEQKFHD 73
                     67*****************************999999988999999988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-41456IPR009057Homeodomain-like
SuperFamilySSF466894.66E-52057IPR009057Homeodomain-like
SMARTSM007170.0012077IPR001005SANT/Myb domain
PfamPF002491.7E-92273IPR001005SANT/Myb domain
CDDcd001673.22E-52455No hitNo description
SMARTSM002974.9E-9120448IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.8E-16327450IPR001487Bromodomain
SuperFamilySSF473702.22E-16347444IPR001487Bromodomain
CDDcd043691.30E-14352442No hitNo description
PfamPF004392.2E-10354433IPR001487Bromodomain
PROSITE profilePS5001412.609357429IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MENHQNQNKN PNQDLENQHH QQVWGTWEEL LLACAVNRHG FKDWDTVAME VQSRTNRPTL  60
LATAHHCEQK FHDLNRRFID DVPPPQQNGD ADGVDSDHVP WLDKLRKLRV AELRRDVQRS  120
DVSILSLQLQ VKRLEDEKAK ENDGKENKKP DLVVSDEEQR PENEKTGREM EETEPANSEP  180
DIRRLDESTT NTDNKLLPTT GEESDRDNQS VNESNSTGSR FDAVKTGEVD IKLNSGPVPV  240
HSGPNEPVQT VRKRKSVEEE SNNGSYDNEA KVLTCESVPP SEERKVEGDS SELHDSVTHS  300
GERCARESSE VQSSTSLTKR KNRLRRQKAS GGDVMPENEE VARVKSEPLV GLLEMIKGHE  360
NFSLFERRLA SQHDLNRYKD IVRQHVDLET IQSRLQNGHY SSCTTAFFRD LLLLFTNAAV  420
FFPHDSTESR LAQQLHRLVV AETKSNSQAQ SDPITQKTDS HPPNAPLSKP DSLLSKHKAS  480
APILVCRKRS SISVKPSTTT IGQKGDQQPI INDKKEKPSS DVKQSLKPSY SESDEEEPPK  540
AKEKPVTGAR SRRSNKNLNS NTGNKKLPSN STPKTGSSGN KPAEATKSEK NRAEGVSDKK  600
KNAAADFLKR IKRNASVEVL RSGGGGGGSS GSSKGGGSSA SMKEQKKTVN NGKGEKGKER  660
ASRYNDGGGS GSGDKRNRTI ESKRSVGRPP KKAAETNVVS TKRGRESSAS AGKDKRPKKR  720
SKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1714722KRPKKRSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488477.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488477.10.0protein mel-28
TrEMBLA0A1S2XFA40.0A0A1S2XFA4_CICAR; protein mel-28
STRINGXP_004488477.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.15e-84DNA-binding bromodomain-containing protein