PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004488419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Dof | ||||||||
Protein Properties | Length: 277aa MW: 30765.6 Da PI: 8.6727 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.9 | 2.2e-38 | 30 | 89 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds ntkfCyynny+lsqPryfCk+CrryWtkGG lrnvP+Ggg+rk+k s+ XP_004488419.1 30 HHALKCPRCDSFNTKFCYYNNYNLSQPRYFCKNCRRYWTKGGVLRNVPIGGGSRKSKPSN 89 6789****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-23 | 30 | 81 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.8E-33 | 32 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.984 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 35 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MQEIHSIGGR NLFGDDRDRR MRTNYHHQNH HALKCPRCDS FNTKFCYYNN YNLSQPRYFC 60 KNCRRYWTKG GVLRNVPIGG GSRKSKPSNS NNSSSSTTPP ATTRKSPPPE DNSNSHSSSE 120 SSTFTTPTAT AEAKTPISNA TSKVFSVNSA SKPEQVGSFT SLVPSTLTND AFSFGFGNNV 180 LDASSFRFGD SHQRGDDQVH VAQGGDSLGI CQWQQQSSYQ RTSLLDHQQL ANGFGPLDWQ 240 GGAGNCLFDV RDVVDQSYWT HPHWSHHVNP SSLFHLP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004488419.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB087851 | 7e-47 | AB087851.1 Pisum sativum PsDof6 mRNA for DNA binding with one finger 6 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004488419.1 | 0.0 | dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A1S2XF61 | 0.0 | A0A1S2XF61_CICAR; dof zinc finger protein DOF5.4-like | ||||
STRING | XP_004488419.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5998 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 2e-32 | OBF binding protein 4 |