PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004488200.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

SBP

Protein Properties

Length: 1034aa MW: 114276 Da PI: 7.2764

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004488200.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.7	1.1e-40	145	222	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_004488200.1 145 VCQVEDCRADLSNAKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 222 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.6E-32	140	207	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.257	143	220	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.16E-38	144	225	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-28	146	219	IPR004333	Transcription factor, SBP-box
CDD	cd00204	2.05E-8	801	915	No hit	No description
SuperFamily	SSF48403	1.83E-8	801	915	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.4E-7	803	918	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence Send to blast
MNMDSRFEGK NQYLYEPVVP EMKSVGKVSL DWNLNDWRWD GDLFTAKQLT SVPTDCRNRQ 60 LFPVDPEIPT NIVDGSINLT CGEGSRELEK RRRGVVVDEG LEMDDEIGSL HLNLGGQVYP 120 IMEGDEKSGK KTKITSVTTS MSRAVCQVED CRADLSNAKD YHRRHKVCDV HSKASKALVG 180 NVMQRFCQQC SRFHVLQEFD EGKRSCRRRL AGHNRRRRKT HPDAALVNGD SPNEERGSSY 240 ILMSLLRLLS NMHSNGPDHM RNIDVLSRLI GNLASVAGTI NGGNVAGMIN GRNTASLLEV 300 PQDLVKAGTS GAAQNVPNTN SNGPEPSRPF DSSTETRNGL IRQDPPESRS PCETVPTNQT 360 VQKCIPSGCV GVGCSNSRLI PQSSNVLPSR GGLPPRPVAA ETTAGRNRLT NIDLNNVYND 420 VQDSMENPGN SPHQPYHPSS VQCDSLKSSP PQTSRNSDST STQSPSSSSG EGQSRTDRIV 480 FKLFGKDPND FPVVLRSQIL NWLSHSPTEI ESYIRPGCII LTICLRLENS AWDELCYNLG 540 SSLRKLIASS NDSLWSTGWI YTRVRHSVAI LYNGQVVLDV PLHLGSPQSC QILCVKPLAV 600 SASANVKFIV KGFNLFLSSA RLLCALEGKY LLQDRCYDLI DGGDAAIGDH ELQQLSFSCH 660 IPNMTGRGFI EVEDNGFGSC SFPFIVAEEE ICSEICTLET VIEAAETADD IQIKTKLMEE 720 KTRAMYFVQE MGWLLHRIRV KFRLGPMAPV QDRFHFNRYT SLVGFSMDHD WCAVTKKLLD 780 IIFEGEVDTG EHTSVELALL NMSLLHKAVK RNCRPMVELL LNFVPVKASD GGDSKEMQVN 840 KSTDRFLFRP DTVGPAGLTP LHVAASMNGY ENVLDALTDD PGMVGLEAWK NAKDGTGLTP 900 NDYASLRGHY SYIQLVQRKT SKNFQTQHVL DIPSTLVDAN MKKQSDGPKS SKVSSFHTEK 960 VATTSTPNHC GLCQQKLAYG GGRMRRALVY RPAMLSMVAI AAVCVCVALL FKSSPKVYYV 1020 FQPFSWESLE YGSI

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence Send to blast

MNMDSRFEGK NQYLYEPVVP EMKSVGKVSL DWNLNDWRWD GDLFTAKQLT SVPTDCRNRQ  60
LFPVDPEIPT NIVDGSINLT CGEGSRELEK RRRGVVVDEG LEMDDEIGSL HLNLGGQVYP  120
IMEGDEKSGK KTKITSVTTS MSRAVCQVED CRADLSNAKD YHRRHKVCDV HSKASKALVG  180
NVMQRFCQQC SRFHVLQEFD EGKRSCRRRL AGHNRRRRKT HPDAALVNGD SPNEERGSSY  240
ILMSLLRLLS NMHSNGPDHM RNIDVLSRLI GNLASVAGTI NGGNVAGMIN GRNTASLLEV  300
PQDLVKAGTS GAAQNVPNTN SNGPEPSRPF DSSTETRNGL IRQDPPESRS PCETVPTNQT  360
VQKCIPSGCV GVGCSNSRLI PQSSNVLPSR GGLPPRPVAA ETTAGRNRLT NIDLNNVYND  420
VQDSMENPGN SPHQPYHPSS VQCDSLKSSP PQTSRNSDST STQSPSSSSG EGQSRTDRIV  480
FKLFGKDPND FPVVLRSQIL NWLSHSPTEI ESYIRPGCII LTICLRLENS AWDELCYNLG  540
SSLRKLIASS NDSLWSTGWI YTRVRHSVAI LYNGQVVLDV PLHLGSPQSC QILCVKPLAV  600
SASANVKFIV KGFNLFLSSA RLLCALEGKY LLQDRCYDLI DGGDAAIGDH ELQQLSFSCH  660
IPNMTGRGFI EVEDNGFGSC SFPFIVAEEE ICSEICTLET VIEAAETADD IQIKTKLMEE  720
KTRAMYFVQE MGWLLHRIRV KFRLGPMAPV QDRFHFNRYT SLVGFSMDHD WCAVTKKLLD  780
IIFEGEVDTG EHTSVELALL NMSLLHKAVK RNCRPMVELL LNFVPVKASD GGDSKEMQVN  840
KSTDRFLFRP DTVGPAGLTP LHVAASMNGY ENVLDALTDD PGMVGLEAWK NAKDGTGLTP  900
NDYASLRGHY SYIQLVQRKT SKNFQTQHVL DIPSTLVDAN MKKQSDGPKS SKVSSFHTEK  960
VATTSTPNHC GLCQQKLAYG GGRMRRALVY RPAMLSMVAI AAVCVCVALL FKSSPKVYYV  1020
FQPFSWESLE YGSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-32	145	219	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004488200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004488200.1	0.0	squamosa promoter-binding-like protein 1
TrEMBL	A0A1S2XEP6	0.0	A0A1S2XEP6_CICAR; squamosa promoter-binding-like protein 1
STRING	XP_004488200.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12