PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488182.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 428aa    MW: 48377.4 Da    PI: 7.7733
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488182.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.4e-29226284259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+ kg+++pr+YYrC++  +Cpv+k+v+r+ +d++++++tYeg+Hnh+
  XP_004488182.1 226 VDGCQWRKYGQKTAKGNPCPRAYYRCSMGnSCPVRKQVQRCFKDETIFITTYEGNHNHQ 284
                     59**************************989***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-31211286IPR003657WRKY domain
SuperFamilySSF1182905.89E-26219286IPR003657WRKY domain
PROSITE profilePS5081128.197220286IPR003657WRKY domain
SMARTSM007741.1E-32225285IPR003657WRKY domain
PfamPF031062.1E-25227284IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEENIEIKKL LEVDEKQTYD HNNIDLQNTK ETSSFHNNTL GSTLVLSLSL NNTTQPPHQI  60
QGNPQIQIGN IRVKLDEAKK ENENLRSMLN LVNERCNVLQ NHLLLAMHMH QLSSSPQNNH  120
NMPKGSRQDE EEPILPTRQF LNIDEPSPSY SSKKEGFSLV ESNENNKGRK FACEDININN  180
EDSINHEGEI NSKIKSQEQM EDQTSKVTCT RARVSIRARS HFSLMVDGCQ WRKYGQKTAK  240
GNPCPRAYYR CSMGNSCPVR KQVQRCFKDE TIFITTYEGN HNHQLPPTAR PMASLTSSAL  300
NTLLSTSTTN LQYGNTFIFS SPFSPPNSTA IATFSPSPTC PTITLDFTIP YSNNFQFKKN  360
TSTPLFPFPL QSFEGFPSMI NKERKLALVD VVSEAIEKNP SLKASLFEAM SSFTNVNPLN  420
INNHIQIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22212287175WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488182.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488182.10.0WRKY transcription factor 42-like isoform X1
TrEMBLA0A1S2XEM60.0A0A1S2XEM6_CICAR; WRKY transcription factor 42-like isoform X1
STRINGXP_004488182.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-48WRKY family protein