PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488113.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 1012aa    MW: 113925 Da    PI: 6.7349
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.4e-2218119199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  XP_004488113.1  18 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDATWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDE 108
                     99*****************************954.4444.48************************************************..557 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l++++ r+
  XP_004488113.1 109 KQQLLLGIKRS 119
                     88789988775 PP

2Auxin_resp120.31.5e-39144226183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaas++s+F+++YnPr+s+ eFv++++k++kal+++vs+GmRf+m+fete+s  rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_004488113.1 144 AAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 226
                     79*******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.23E-438147IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-4110133IPR015300DNA-binding pseudobarrel domain
CDDcd100173.80E-1917109No hitNo description
PROSITE profilePS5086312.11118120IPR003340B3 DNA binding domain
SMARTSM010195.2E-2318120IPR003340B3 DNA binding domain
PfamPF023621.6E-2018119IPR003340B3 DNA binding domain
PfamPF065071.2E-34144226IPR010525Auxin response factor
PfamPF023092.3E-8883971IPR033389AUX/IAA domain
PROSITE profilePS5174523.027885969IPR000270PB1 domain
SuperFamilySSF542771.91E-8898963No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1012 aa     Download sequence    Send to blast
MLASDMGLKQ NQQPTEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS MQPPAQEIVA  60
KDLHDATWTF RHIYRGQPKR HLLTTGWSVF VSTKRLFAGD SVLFIRDEKQ QLLLGIKRSS  120
RQQPALSSSV ISSDSMHIGI LAAAAHAASN NSPFTIFYNP RTSPCEFVIP LAKYNKALYT  180
HVSLGMRFRM MFETEESGVR RYMGTITGIS DLDPVRWKNS QWRNLQVGWD ESTAGERPSR  240
VSIWEIEPVV TPFYICPPPF FRPKFPKQPG MPEDESEIEN AFKRAMPWLG DELGMKDASS  300
SIFPGLSLVQ WMSMQQNNNQ FSSPQSGLLP PSMLSSNSLH GNLNTDDPSK ILNFQAPSLQ  360
FNKPNLPNQV NQLQHSPNSW SQQQQQQQRL QSLLQTPLNQ LQQQQQQQQR QQQLPGMQNL  420
PQPQQQPQQT QQNAQQPQQQ QQHQQQQQQP SQNANMNNGT VASNQIPNQC VQQPVTYSQL  480
QQQLLSTSIP TQQNFQSVSK SPLLMTSLPQ DSQFQQQMDQ QASLLQRQQQ QQQNQLQQSS  540
LHLLQQSLLQ RAPQQPQMNQ ISQQNISEQQ QPQMQLLQKL QQQQQQQQQQ QQQPLSTSCA  600
LLQSQLMQQQ NTHQQLPQLP LSQHQPQQLG NNALSMEKLL NNNYSSPGLM HPQQLPVNHP  660
QNTQKSPTNT RAPSAFTDGD APSCSTSPST NNCQTSPPNL LKRNQPDTFG GPSIVETTNN  720
LMQEHQSKSD TQIKHELHSV KGPDKQKYKG AINDQMEASS GTSYGIDPGN IHQNFPLSNF  780
YMDGDVHSQP RNNLPFCPNI DGLTPDPLLS RGYDSQKDLQ NLLSNYGGAP RDIEIETELS  840
TAAISSQSFG VPNMSFKPGC SNDIAIPDTG VLNNGLWSNQ TQRMRTYTKV QKCGSVGRCI  900
DVTRYKGYDE LRNDLARMFG IEGLLEDPLR TDWKLVYVDH ENDILLVGDD PWEEFVNCVQ  960
SIKILSSAEV QQMSLEGDLG HVPISNQACS GTESGNAWRA QYDDNSAASF NR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1225247144388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488113.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488112.10.0auxin response factor 19 isoform X1
RefseqXP_012574328.10.0auxin response factor 19 isoform X2
TrEMBLA0A1S2XEH90.0A0A1S2XEH9_CICAR; Auxin response factor
TrEMBLA0A1S3EFZ10.0A0A1S3EFZ1_CICAR; Auxin response factor
STRINGXP_004488112.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19