PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004488113.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ARF | ||||||||
Protein Properties | Length: 1012aa MW: 113925 Da PI: 6.7349 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.4 | 2.4e-22 | 18 | 119 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ XP_004488113.1 18 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDATWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDE 108 99*****************************954.4444.48************************************************..557 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l++++ r+ XP_004488113.1 109 KQQLLLGIKRS 119 88789988775 PP | |||||||
2 | Auxin_resp | 120.3 | 1.5e-39 | 144 | 226 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++s+F+++YnPr+s+ eFv++++k++kal+++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_004488113.1 144 AAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 226 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.23E-43 | 8 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-41 | 10 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.80E-19 | 17 | 109 | No hit | No description |
PROSITE profile | PS50863 | 12.111 | 18 | 120 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.2E-23 | 18 | 120 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-20 | 18 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-34 | 144 | 226 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.3E-8 | 883 | 971 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.027 | 885 | 969 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.91E-8 | 898 | 963 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1012 aa Download sequence Send to blast |
MLASDMGLKQ NQQPTEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS MQPPAQEIVA 60 KDLHDATWTF RHIYRGQPKR HLLTTGWSVF VSTKRLFAGD SVLFIRDEKQ QLLLGIKRSS 120 RQQPALSSSV ISSDSMHIGI LAAAAHAASN NSPFTIFYNP RTSPCEFVIP LAKYNKALYT 180 HVSLGMRFRM MFETEESGVR RYMGTITGIS DLDPVRWKNS QWRNLQVGWD ESTAGERPSR 240 VSIWEIEPVV TPFYICPPPF FRPKFPKQPG MPEDESEIEN AFKRAMPWLG DELGMKDASS 300 SIFPGLSLVQ WMSMQQNNNQ FSSPQSGLLP PSMLSSNSLH GNLNTDDPSK ILNFQAPSLQ 360 FNKPNLPNQV NQLQHSPNSW SQQQQQQQRL QSLLQTPLNQ LQQQQQQQQR QQQLPGMQNL 420 PQPQQQPQQT QQNAQQPQQQ QQHQQQQQQP SQNANMNNGT VASNQIPNQC VQQPVTYSQL 480 QQQLLSTSIP TQQNFQSVSK SPLLMTSLPQ DSQFQQQMDQ QASLLQRQQQ QQQNQLQQSS 540 LHLLQQSLLQ RAPQQPQMNQ ISQQNISEQQ QPQMQLLQKL QQQQQQQQQQ QQQPLSTSCA 600 LLQSQLMQQQ NTHQQLPQLP LSQHQPQQLG NNALSMEKLL NNNYSSPGLM HPQQLPVNHP 660 QNTQKSPTNT RAPSAFTDGD APSCSTSPST NNCQTSPPNL LKRNQPDTFG GPSIVETTNN 720 LMQEHQSKSD TQIKHELHSV KGPDKQKYKG AINDQMEASS GTSYGIDPGN IHQNFPLSNF 780 YMDGDVHSQP RNNLPFCPNI DGLTPDPLLS RGYDSQKDLQ NLLSNYGGAP RDIEIETELS 840 TAAISSQSFG VPNMSFKPGC SNDIAIPDTG VLNNGLWSNQ TQRMRTYTKV QKCGSVGRCI 900 DVTRYKGYDE LRNDLARMFG IEGLLEDPLR TDWKLVYVDH ENDILLVGDD PWEEFVNCVQ 960 SIKILSSAEV QQMSLEGDLG HVPISNQACS GTESGNAWRA QYDDNSAASF NR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-122 | 5 | 247 | 144 | 388 | Auxin response factor 5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004488113.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004488112.1 | 0.0 | auxin response factor 19 isoform X1 | ||||
Refseq | XP_012574328.1 | 0.0 | auxin response factor 19 isoform X2 | ||||
TrEMBL | A0A1S2XEH9 | 0.0 | A0A1S2XEH9_CICAR; Auxin response factor | ||||
TrEMBL | A0A1S3EFZ1 | 0.0 | A0A1S3EFZ1_CICAR; Auxin response factor | ||||
STRING | XP_004488112.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |