PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488112.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 1120aa    MW: 125749 Da    PI: 6.5083
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.8e-22126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  XP_004488112.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDATWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDE 216
                     99*****************************954.4444.48************************************************..557 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l++++ r+
  XP_004488112.1 217 KQQLLLGIKRS 227
                     88789988775 PP
2Auxin_resp120.11.7e-39252334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaas++s+F+++YnPr+s+ eFv++++k++kal+++vs+GmRf+m+fete+s  rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_004488112.1 252 AAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 334
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-43116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100174.44E-19125217No hitNo description
PROSITE profilePS5086312.111126228IPR003340B3 DNA binding domain
PfamPF023621.8E-20126227IPR003340B3 DNA binding domain
SMARTSM010195.2E-23126228IPR003340B3 DNA binding domain
PfamPF065071.3E-34252334IPR010525Auxin response factor
PfamPF023092.7E-89911079IPR033389AUX/IAA domain
PROSITE profilePS5174523.0279931077IPR000270PB1 domain
SuperFamilySSF542772.21E-810061071No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1120 aa     Download sequence    Send to blast
MKAPSNGYLP NSGEGERKTI NTELWHACAG PLVSMPPVGS LVVYFPQGHS EQVAASMQKE  60
ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKEAML ASDMGLKQNQ  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDATWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRSSRQ QPALSSSVIS  240
SDSMHIGILA AAAHAASNNS PFTIFYNPRT SPCEFVIPLA KYNKALYTHV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPKQPGMP EDESEIENAF KRAMPWLGDE LGMKDASSSI FPGLSLVQWM  420
SMQQNNNQFS SPQSGLLPPS MLSSNSLHGN LNTDDPSKIL NFQAPSLQFN KPNLPNQVNQ  480
LQHSPNSWSQ QQQQQQRLQS LLQTPLNQLQ QQQQQQQRQQ QLPGMQNLPQ PQQQPQQTQQ  540
NAQQPQQQQQ HQQQQQQPSQ NANMNNGTVA SNQIPNQCVQ QPVTYSQLQQ QLLSTSIPTQ  600
QNFQSVSKSP LLMTSLPQDS QFQQQMDQQA SLLQRQQQQQ QNQLQQSSLH LLQQSLLQRA  660
PQQPQMNQIS QQNISEQQQP QMQLLQKLQQ QQQQQQQQQQ QPLSTSCALL QSQLMQQQNT  720
HQQLPQLPLS QHQPQQLGNN ALSMEKLLNN NYSSPGLMHP QQLPVNHPQN TQKSPTNTRA  780
PSAFTDGDAP SCSTSPSTNN CQTSPPNLLK RNQPDTFGGP SIVETTNNLM QEHQSKSDTQ  840
IKHELHSVKG PDKQKYKGAI NDQMEASSGT SYGIDPGNIH QNFPLSNFYM DGDVHSQPRN  900
NLPFCPNIDG LTPDPLLSRG YDSQKDLQNL LSNYGGAPRD IEIETELSTA AISSQSFGVP  960
NMSFKPGCSN DIAIPDTGVL NNGLWSNQTQ RMRTYTKVQK CGSVGRCIDV TRYKGYDELR  1020
NDLARMFGIE GLLEDPLRTD WKLVYVDHEN DILLVGDDPW EEFVNCVQSI KILSSAEVQQ  1080
MSLEGDLGHV PISNQACSGT ESGNAWRAQY DDNSAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1671535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488112.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488112.10.0auxin response factor 19 isoform X1
TrEMBLA0A1S2XEH90.0A0A1S2XEH9_CICAR; Auxin response factor
STRINGXP_004488112.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19