PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488104.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 204aa    MW: 22424 Da    PI: 5.0261
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488104.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.1e-161666155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s y+G+r +k +g+Wv+eIr p++   r+r++lg++++a +Aa+a +aa  +l+g
  XP_004488104.1 16 SSYRGIRKRK-WGKWVSEIRLPNS---RQRIWLGSYDSAVKAARAFDAATFCLRG 66
                    67*****999.**********933...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-191675IPR016177DNA-binding domain
PfamPF008473.8E-91666IPR001471AP2/ERF domain
CDDcd000184.05E-271676No hitNo description
SMARTSM003801.2E-291780IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-281775IPR001471AP2/ERF domain
PROSITE profilePS5103220.9031774IPR001471AP2/ERF domain
PRINTSPR003676.1E-91829IPR001471AP2/ERF domain
PRINTSPR003676.1E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVKSNVEKTA AERSDSSYRG IRKRKWGKWV SEIRLPNSRQ RIWLGSYDSA VKAARAFDAA  60
TFCLRGGGAK FNFPDDPPDI AGGRSMTPSQ IQDAAARFAN SVRPVNTPIE TPSSSVRTTL  120
LPMESPSPAL SDGTFQTDSG VAENGCFKEM VSVNGSGYCV PDYSIFPGFD YFGGDFYVPE  180
LPSYDYGDEN IDGLIIHNSF LWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1317761474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488104.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488104.11e-150ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC21e-49ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1S2XEH01e-149A0A1S2XEH0_CICAR; ethylene-responsive transcription factor ERF017-like
STRINGXP_004488104.11e-149(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]