PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004487821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 27329.9 Da PI: 5.9139 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.4e-21 | 89 | 138 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg+f taeeAa+a++aa+k+++g XP_004487821.1 89 VYRGIRQRP-WGKWAAEIRDPQ----QgVRVWLGTFSTAEEAARAYDAAAKRIRG 138 69*******.**********94....25************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.4E-36 | 89 | 152 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-14 | 89 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-33 | 89 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 89 | 147 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.289 | 89 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-12 | 90 | 101 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.03E-21 | 90 | 148 | No hit | No description |
PRINTS | PR00367 | 6.4E-12 | 112 | 128 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MCGGAIISDF IGVKRDRNLW SEIDPSVDLL GLGSIAAATS NESSPPLCNL PQFSDKKVVA 60 CDKEEKKRSV VTVEKGKKNT GGTRARKNVY RGIRQRPWGK WAAEIRDPQQ GVRVWLGTFS 120 TAEEAARAYD AAAKRIRGDK AKLNFPDAAV TASPPAKKRC LSPDQASSQS SYEPIGLGEG 180 MDIKDQISQL EWILGLEHEL PQAQVEAQPK PTSEPAHFTL PDAADWDNSF LDLWNLEEMV 240 MPMSNMIY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 90 | 146 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-22 | 85 | 146 | 1 | 63 | ATERF1 |
3gcc_A | 2e-22 | 85 | 146 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004487821.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ032362 | 6e-50 | FJ032362.1 Halimodendron halodendron ethylene-responsive factor 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004487821.1 | 0.0 | ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | P42736 | 2e-44 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A1S2XG52 | 0.0 | A0A1S2XG52_CICAR; ethylene-responsive transcription factor RAP2-3 | ||||
STRING | XP_004487821.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-38 | ethylene-responsive element binding protein |