PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004487634.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 468aa MW: 52224.2 Da PI: 6.3566 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.6 | 6.8e-06 | 358 | 396 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_004487634.1 358 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 396 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.582 | 347 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-11 | 357 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.58E-7 | 357 | 400 | No hit | No description |
SMART | SM00353 | 0.0049 | 358 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-9 | 361 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 468 aa Download sequence Send to blast |
MADDDQFHHS SGNSNWWDTS RNNMRFDQSG TSQTSSSNNI VDFAWQNSDM VDIKPRSSSM 60 DDNSSIVFHD DTQKLQQPQD SSTTSIDPNL HMMGLGLSSH AMDWNQPPLI RSEKGSSENN 120 LRSMLEENLS STRNNFEQEN MMGLCQGQIQ WRSSSDQKLF SAVESSSNEF KQVNNRSFSL 180 DQNQFSPSYS SGESNVTSQG LMDYGTPSIL QGLLGSDHSN NIQHQQQQGS FENRPMSFSY 240 TTNNYGLNSN NELNIPSNWS TKVPQFLRTN SPPKQQPPNN QLHFTNNTPF WNASEAANSI 300 KDVRSSFFPS LQPQFSTPNF DSQAKNISEV GVVKKSGSEP APKRTRNETP STLPAFKVRK 360 EKMGDRITAL QQLVSPFGKT DTASVLSEAI EYIKFLHEQV TVLSTPYMKS GAPTQNIQQN 420 SGKSKKSEGA KQDLRSRGLC LVPVSSTFPV THETTVDFWT PTFGGTSR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004487634.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 2e-42 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004487634.1 | 0.0 | transcription factor bHLH123-like isoform X1 | ||||
TrEMBL | A0A1S2XFS2 | 0.0 | A0A1S2XFS2_CICAR; transcription factor bHLH123-like isoform X1 | ||||
STRING | XP_004487634.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20640.1 | 1e-67 | bHLH family protein |