PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487582.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 345aa    MW: 38209.4 Da    PI: 6.5044
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.3e-29155213259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + +tY  eHnh+
  XP_004487582.1 155 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTNLLVTYAYEHNHP 213
                     69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-30146215IPR003657WRKY domain
SuperFamilySSF1182901.7E-25150215IPR003657WRKY domain
SMARTSM007741.0E-35154214IPR003657WRKY domain
PROSITE profilePS5081131.8155215IPR003657WRKY domain
PfamPF031061.1E-24156213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMYCSHVHNK LHCQSVTPWR LILNTNPNPF FSLTFTLLLS SPPPLPSFSG DPTFPITIFY  60
TNQLLKKFIN FLLLLLPLIM YKRRFNTKPL YVTDPDEPEP EPISEAAPAS PSSCEDTKTE  120
EPSPKKRKEM KKRVVTIPIG EVEGSKSKGE TYPPSDSWAW RKYGQKPIKG SPYPRGYYRC  180
SSSKGCPARK QVERSRVDPT NLLVTYAYEH NHPLPLPKSH SSSSAVTVTV ETPSTGDSSA  240
ECAATTVHPE DLTVFAAHPD FELAGDSTIL LSHHHHAVFG WFDDVASTGV LVSPICGEVE  300
DLTLTMREED ESLFADLGEL PECSAVFRQR NIPSGSVIQC GGITG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-18132215679Disease resistance protein RRS1
5w3x_D1e-18132215679Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487582.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1445361e-114BT144536.1 Medicago truncatula clone JCVI-FLMt-4P21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487582.10.0probable WRKY transcription factor 69
SwissprotQ93WV52e-73WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLA0A1S2XFP00.0A0A1S2XFP0_CICAR; probable WRKY transcription factor 69
STRINGXP_004487582.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.22e-60WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]