PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004487558.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 296aa MW: 32796.5 Da PI: 8.496 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 214 | 236 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_004487558.1 214 HECSICGAEFTSGQALGGHMRRH 236 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.36E-8 | 126 | 149 | No hit | No description |
PROSITE profile | PS50157 | 10.596 | 127 | 154 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.3E-12 | 127 | 151 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 127 | 149 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.36E-8 | 209 | 236 | No hit | No description |
Pfam | PF13912 | 1.2E-12 | 214 | 238 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.723 | 214 | 236 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 214 | 236 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 216 | 236 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MEGIGGIEEH VSDATHLVKG KRTKRRLRSL SPYTVVTTTV ISSCSSATGD NIGGGSFSST 60 TFEGIDQEEE TDMANCLILL AQGRVGREQE NNKRRLQNHQ QQSENHVDGY GYNKITEKAT 120 KNGYDIYECK TCNRSFHSFQ ALGGHRASHK KPKMKEEKNS CEIDEANKHN HTKKNSINIS 180 PMVPPVSLEL RCGVNINFNG HGNDKKPNRP NKIHECSICG AEFTSGQALG GHMRRHRASI 240 NNNTNHHNNN KVGVHVKSRN VLELDLNLPA PENDIQDSTF QFPVVTASPA LVGCHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004487558.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X87374 | 6e-38 | X87374.1 P.sativum putative zinc finger protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004487558.1 | 0.0 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A1S2XG87 | 0.0 | A0A1S2XG87_CICAR; zinc finger protein ZAT5-like | ||||
STRING | XP_004487558.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 7e-52 | C2H2 family protein |