PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487557.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 399aa    MW: 45315.4 Da    PI: 7.6682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487557.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.1e-07243265123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  nL+ H+r H
  XP_004487557.1 243 HYCKVCGKGFKRDANLRMHMRAH 265
                     68*******************99 PP
2zf-C2H210.70.0016333356123
                     EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                     y+C+ C+ k Fs  s+L++H + +
  XP_004487557.1 333 YVCKRCNmKQFSVLSDLRTHEKHC 356
                     9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.33E-6241268No hitNo description
SMARTSM003550.0029243265IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-7243299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653243270IPR007087Zinc finger, C2H2
PROSITE patternPS000280245265IPR007087Zinc finger, C2H2
SMARTSM00355170295328IPR015880Zinc finger, C2H2-like
SMARTSM0035527333355IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MISNSTQSSF EREHVDQGLQ MLPMVTEDLM PLPTSMEGIS LSSLPSNSLL FNLSILKDKL  60
NQVQTFVDVI LSPNQQDSTN SIISTMNSTI QEIIVTATSI MFTCQHMALT FPQGTTITPC  120
TNQELLEKNS NSIHHSNFGN INTSIDLRGQ SLFSNDDQSQ PLDWFSESYN SNINYKIKED  180
DQRVEISETS IKGSDETMSP KIICSHDDNI NLKFGPSYIW VGPDCEDDIV ELDATDLLAK  240
YTHYCKVCGK GFKRDANLRM HMRAHGDEYK SSASLSNPMN KNRENYLISM KNKKYSCPQK  300
GCRWNQKHVK FQPLKSLICA KNHYKRSHCP KMYVCKRCNM KQFSVLSDLR THEKHCGDLR  360
WQCSCGTNFS RKDKLMGHVG LFVGHHPVIN GLSFSTHTN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487557.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487557.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1S2XDA80.0A0A1S2XDA8_CICAR; protein SENSITIVE TO PROTON RHIZOTOXICITY 2
STRINGXP_004487557.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-89C2H2 family protein