PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487497.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family G2-like
Protein Properties Length: 410aa    MW: 46369.6 Da    PI: 8.3758
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.21.9e-3348102155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  XP_004487497.1  48 KPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 102
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.48945105IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-3146103IPR009057Homeodomain-like
SuperFamilySSF466891.97E-1647103IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-2348103IPR006447Myb domain, plants
PfamPF002492.4E-950101IPR001005SANT/Myb domain
PfamPF143791.2E-24156203IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MYHQHHHQHQ GKNIHSSSRM SIPSERHMFL QTGNGSSDSG LVLSTDAKPR LKWTPDLHAR  60
FIEAVNQLGG ADKATPKTVM KLMGIPGLTL YHLKSHLQKY RLSKNLHGQS NNNNVTHKIT  120
DTHATSGTDE RSLSETNGTH MNKLITLGPQ TNNKDIHISE ALQMQIEVQR RLNEQLEVQR  180
HLQLRIEAQG KYLQSVLEKA QETLGRQNLG IVGLEAAKVQ LSELVSKVSS QSLNSAFSEM  240
KELQGFNNPQ QQTQITTNQP NDCSMDSSCL TSSDRSQKEQ QEIIQNGGGF GLRHFNNNNN  300
HLFMERKELQ QVTETNIRNS EVLKWCSDEV KKNTSTNFHG NLSMSIGVES HSDGEFQRTS  360
RTDQTMKLAM DDHKMQPSNS YFSTSRLDLN SRGDNNEGCK QLDLNRFSWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-2047104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-2047104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-2048104157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-2048104157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-2048104157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-2048104157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-2047104158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-2047104158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-2047104158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-2047104158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-2047104158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-2047104158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487497.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1469490.0BT146949.1 Medicago truncatula clone JCVI-FLMt-19I1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487497.10.0myb-related protein 2-like isoform X1
SwissprotQ9SQQ91e-126PHL9_ARATH; Myb-related protein 2
TrEMBLA0A1S3E9G10.0A0A1S3E9G1_CICAR; myb-related protein 2-like isoform X1
STRINGXP_004487497.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-122G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]