PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487418.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 478aa    MW: 53099.7 Da    PI: 6.649
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-183077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l+++v+++G g+W+++ +  g+ R++k+c++rw ++l
   XP_004487418.1 30 KGPWTPQEDMILIEYVNKHGEGNWNSVQKNSGLLRCGKSCRLRWANHL 77
                     79******************************99**********9986 PP
2Myb_DNA-binding50.54.6e-1683126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE++++++++++lG++ W++ a+ ++ gRt++++k++w++
   XP_004487418.1  83 KGAFSEEEEKIIIELHAKLGNK-WARMAAQLP-GRTDNEIKNFWNT 126
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0382577IPR017930Myb domain
SuperFamilySSF466892.7E-3027124IPR009057Homeodomain-like
SMARTSM007178.6E-162979IPR001005SANT/Myb domain
PfamPF002491.3E-163077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-243184IPR009057Homeodomain-like
CDDcd001672.60E-123277No hitNo description
PROSITE profilePS5129425.20578132IPR017930Myb domain
SMARTSM007171.1E-1582130IPR001005SANT/Myb domain
PfamPF002493.5E-1583126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2585131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MISNNKTNSN NKNIEVDNEQ EDDARNGIKK GPWTPQEDMI LIEYVNKHGE GNWNSVQKNS  60
GLLRCGKSCR LRWANHLRPN LKKGAFSEEE EKIIIELHAK LGNKWARMAA QLPGRTDNEI  120
KNFWNTRMKR RQRAGLPLYP PEIHAEAIAY NNHLMQQQQK YDEPFSSSSS LSFSLLLSSC  180
YPKKLNDQNH YNHPLQNQNN SADSANNHYT NDNPQFNETL ALQPHSPYPS SSSTLFNQSF  240
NAAAAAAPSD LSYDHGFNAG GGGRGGGSMY EPFPLVPGGS NTEISSSQTT IDSSSPASSM  300
VNNNDYYEVA PISNEGNSGL LDALVVEGRN LSSNDKSKSE DSNVKGNICY KRKSMESEDS  360
TIPLVSAMKK KKKKKKKKNG ISSNEIQKEG FSSSQLSTGK KAIEEDPIEE MNSMYDDDLH  420
CLLNNFPEIP MPEWYCRGKS QSLGIETPTD HASSSSGPTN QEFAWTLGPT WNNMPGIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29301317107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350372KRKSMESEDSTIPLVSAMKKKKK
2368377KKKKKKKKKK
3369377KKKKKKKKK
4371377KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487418.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1574888e-88AC157488.1 Medicago truncatula chromosome 2 clone mte1-33n12, complete sequence.
GenBankAC1652758e-88AC165275.5 Medicago truncatula chromosome 2 BAC clone mte1-36o22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487418.10.0transcription factor MYB101
TrEMBLA0A1S2XFZ60.0A0A1S2XFZ6_CICAR; transcription factor MYB101
STRINGXP_004487418.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.13e-71myb domain protein 33