PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487223.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 279aa    MW: 30946 Da    PI: 5.1955
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011110132123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C++ Fs++  L  H++ H
  XP_004487223.1 110 FSCNFCSRQFSTSQALGGHQNAH 132
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-6107137No hitNo description
Gene3DG3DSA:3.30.160.607.0E-5108136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.822110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAASEQSSST SEAISNKVSD DESNSDDNKV MQIKENDDVK SEQHQTSNSN FLFTKLSNDG  60
LVCGPKVQEL DFFNPSKNIE VGSSSLYWTN KTNNIEENIE EEKSSESKAF SCNFCSRQFS  120
TSQALGGHQN AHKRERAVAK HRQEIQNGFG SPSTHFPYYT NYPTLSTPSY YGIGSSYNKA  180
LGVRMESMIH KPSYNTWTPP PFKLGSTPMW SPILQEMRNF SSFDGLKLED NNVGESSVNV  240
ATKSNSPVKK STMVDIVGDI NKEEASNSES PSLDLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487223.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487223.10.0zinc finger protein 1-like
TrEMBLA0A1S2XCI80.0A0A1S2XCI8_CICAR; zinc finger protein 1-like
STRINGXP_004487223.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-16C2H2 family protein