PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487192.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 463aa    MW: 51664.3 Da    PI: 9.1352
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487192.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-056082123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C k F r  nL+ H r H
  XP_004487192.2 60 FVCEICLKGFQRDQNLQLHRRGH 82
                    89*******************88 PP
2zf-C2H212.30.00051136158123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_004487192.2 136 WKCEKCSKFYAVQSDWKAHSKTC 158
                     58*****************9998 PP
3zf-C2H210.70.0017166184523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg+ Fsr++++++H   +
  XP_004487192.2 166 DCGTIFSRRDSFVTHRAFC 184
                     8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-45982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.33E-55982No hitNo description
PROSITE profilePS5015710.3056082IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.33E-5131156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVEIMNNTQI SNGFLHQNTT TVSNDNPPLL KRKRNLPGNP DPEAEVISLS PKTLMATNRF  60
VCEICLKGFQ RDQNLQLHRR GHNLPWKLKQ RTSQEVRKRV YVCPEKTCVH NHPSRALGDL  120
TGIKKHFCRK HGEKKWKCEK CSKFYAVQSD WKAHSKTCGT REYKCDCGTI FSRRDSFVTH  180
RAFCDALAEE TARINGSTNI NNSLGMVSNN IGYSIMQTSL APSNFSSIFK PISCTNQETS  240
RGLSLWMNQT SQAHDTMTNN SNLHEIHPLV GNGNTLVSCS NPPNSNNYEL NWLFGNKLSS  300
NNGCEELSSS VSLPLVNSNI DKDSSNNLIS VPSLYSSQHQ SQTTFANMSA TALLQKAAQF  360
GTTNSADPLL LGSLGMRCNS TTPTQQDHGN KFCGVYGSAS AADKYYSGEL SQMPPTKRRR  420
VHTDETVWGQ TRDFLGVGVL IMCHPSSIKG WILFNHVFLI RSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35132201372Zinc finger protein JACKDAW
5b3h_F3e-35132201372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416420KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487192.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1405471e-107AC140547.18 Medicago truncatula clone mth2-17p16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487192.30.0zinc finger protein MAGPIE
SwissprotQ9ZWA61e-141IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A1S2XEV30.0A0A1S2XEV3_CICAR; zinc finger protein MAGPIE
STRINGXP_004487192.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-143C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]