PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004487176.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 339aa MW: 37639.1 Da PI: 6.6433 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.4 | 8.9e-37 | 22 | 136 | 2 | 110 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaesssssasnsssg..... 88 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ + +++ +++++ +++++++g XP_004487176.1 22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELppwNPIPN----NVTEELQQEENNAGtrdmv 112 79**************************************************************55433333....3344444443333345556 PP TCP 89 ...kaaksaakskksqksaasalnl 110 + ++++ +++ +++++++n XP_004487176.1 113 iaaE-NSESSGYNFQLQDTENHHNH 136 6531.22222333444444333433 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.9E-33 | 22 | 130 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.172 | 24 | 82 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 339 aa Download sequence Send to blast |
MGMKSTGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKSAID KLAELPPWNP IPNNVTEELQ QEENNAGTRD MVIAAENSES 120 SGYNFQLQDT ENHHNHSAFI PSNIDTDAIA FFPTSSAASS INFQSYPSDI ISRTNNSIQD 180 LGLSLHSFQD HGMMHGQSQE GGNHQTGSND HHQTLFTDSN PVGFEANYHR IVNWNNDDHR 240 TGFMVNSAPF LSQGSAFSHR GTLQSSFSQS LRPWNDIPME TSSVNHNQKS QQIQQASIFG 300 SRFLSDALPG FCIPARIQGE DESHVVVSDR PSSSSNSHH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-23 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-23 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004487176.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004487176.1 | 0.0 | transcription factor TCP4-like | ||||
Refseq | XP_004487177.1 | 0.0 | transcription factor TCP4-like | ||||
Refseq | XP_004487178.1 | 0.0 | transcription factor TCP4-like | ||||
Refseq | XP_004487179.1 | 0.0 | transcription factor TCP4-like | ||||
Refseq | XP_004487180.1 | 0.0 | transcription factor TCP4-like | ||||
TrEMBL | A0A1S2XCF0 | 0.0 | A0A1S2XCF0_CICAR; transcription factor TCP4-like | ||||
STRING | XP_004487176.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15030.3 | 9e-69 | TCP family protein |