PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004487156.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Trihelix

Protein Properties

Length: 934aa MW: 106936 Da PI: 8.069

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004487156.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.8	3.7e-15	12	100	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +Li+a e+ +l+r++l+k++W+e++k++ + ++ +r+ +qCk++++ l+k+yk +k++ ++ + +p+fd l+ XP_004487156.1 12 WSEEATFTLIDAWGERYVKLNRSNLRKKHWKEIAKAVndrhnHVKKARRTNVQCKNRIDALKKKYKIEKARVSES-GDYADYWPFFDVLD 100 ***********************************99888778899******************99985.777789**9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.3E-23	10	102	No hit	No description
Pfam	PF03004	8.1E-7	408	548	IPR004252	Probable transposase, Ptta/En/Spm, plant
SuperFamily	SSF54001	2.75E-12	757	924	No hit	No description
Gene3D	G3DSA:3.30.310.130	3.1E-4	833	876	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0008234	Molecular Function	cysteine-type peptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 934 aa Download sequence Send to blast
MEDSLTGYED GWSEEATFTL IDAWGERYVK LNRSNLRKKH WKEIAKAVND RHNHVKKARR 60 TNVQCKNRID ALKKKYKIEK ARVSESGDYA DYWPFFDVLD SLIGDTFPAK NLSPVIVPPV 120 KVPTWTPPMK APAWALAPVG PRSRSQKRPA PVTTTSASLE SLEEEEEGED SCFRRNLSAF 180 AAAVAEAAES EIESSDGLIN ESKKLKRGIN EMEFGGIEKF GEIYERVEEE KQREMVELEK 240 QKMQSAKDLE YQSKTTKRSK NMNDPSVPSQ SELNAQSTQK NVRRATLLKE FLALNRIAGQ 300 RISVEFDQST GMPSGENKTK FKSHVAFLGR SEVSILIDEW DSVDENVKNQ IWATILKIWD 360 ILNSEFLKKK WISYAGERWR AFKTCLTSRY IHGDLCNKSP LEVYDFLDEE TWQAFIQKRK 420 DPSFLDKRKK AQMVQVYNKC PHRLSRGGYE LLKKRMMQEK LKQSKESSVD LVAAPPSPLS 480 RHEMWKRARQ RPSGDYTSED TRKIAEKIDS LVEQTTQGTF VPQGRKDILT EAIGQPEHPG 540 RVRGVGQGVG IRQYFGPHSR NSTTPVLSNE QIKTMKVELT QQIKEQLMQD LTTMGFSKLY 600 PKVSTCSPNA TVHTSTKGSC SVVTPTLEED DIPERCELYV DNFLHVVAYG NAYKIGPTIH 660 NQILDNDMVK VVVDEVLDAN VQVPMPTDEV KTVGQAPNNF IQWPKRFIRI VSDKDVDGSK 720 KADVSPKRSE PQLDSVQQLV LKAMNMSGSI RLDLEHDETD IFWLSQRDII ELCMGKQELC 780 ITILQLWLTY LHRLCIDVGK NDLYGFIDPY FIKSQLDPTN AQTYLQKKLF EDKRECYLAP 840 YHNNCHWQLL IICPRKNTVV FLCSLGRKPE KDIIHIVDSA LGECNKLQGI RKKPIWFVPD 900 IFGNLKSFHD DELKNVRQCC ASLILEYIQT IENA

Sequence ? help Back to Top

Protein Sequence Length: 934 aa Download sequence Send to blast

MEDSLTGYED GWSEEATFTL IDAWGERYVK LNRSNLRKKH WKEIAKAVND RHNHVKKARR  60
TNVQCKNRID ALKKKYKIEK ARVSESGDYA DYWPFFDVLD SLIGDTFPAK NLSPVIVPPV  120
KVPTWTPPMK APAWALAPVG PRSRSQKRPA PVTTTSASLE SLEEEEEGED SCFRRNLSAF  180
AAAVAEAAES EIESSDGLIN ESKKLKRGIN EMEFGGIEKF GEIYERVEEE KQREMVELEK  240
QKMQSAKDLE YQSKTTKRSK NMNDPSVPSQ SELNAQSTQK NVRRATLLKE FLALNRIAGQ  300
RISVEFDQST GMPSGENKTK FKSHVAFLGR SEVSILIDEW DSVDENVKNQ IWATILKIWD  360
ILNSEFLKKK WISYAGERWR AFKTCLTSRY IHGDLCNKSP LEVYDFLDEE TWQAFIQKRK  420
DPSFLDKRKK AQMVQVYNKC PHRLSRGGYE LLKKRMMQEK LKQSKESSVD LVAAPPSPLS  480
RHEMWKRARQ RPSGDYTSED TRKIAEKIDS LVEQTTQGTF VPQGRKDILT EAIGQPEHPG  540
RVRGVGQGVG IRQYFGPHSR NSTTPVLSNE QIKTMKVELT QQIKEQLMQD LTTMGFSKLY  600
PKVSTCSPNA TVHTSTKGSC SVVTPTLEED DIPERCELYV DNFLHVVAYG NAYKIGPTIH  660
NQILDNDMVK VVVDEVLDAN VQVPMPTDEV KTVGQAPNNF IQWPKRFIRI VSDKDVDGSK  720
KADVSPKRSE PQLDSVQQLV LKAMNMSGSI RLDLEHDETD IFWLSQRDII ELCMGKQELC  780
ITILQLWLTY LHRLCIDVGK NDLYGFIDPY FIKSQLDPTN AQTYLQKKLF EDKRECYLAP  840
YHNNCHWQLL IICPRKNTVV FLCSLGRKPE KDIIHIVDSA LGECNKLQGI RKKPIWFVPD  900
IFGNLKSFHD DELKNVRQCC ASLILEYIQT IENA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004487156.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004487156.1	0.0	uncharacterized protein LOC101499726 isoform X2
TrEMBL	A0A1S2XFF7	0.0	A0A1S2XFF7_CICAR; uncharacterized protein LOC101499726 isoform X2
STRING	XP_004487155.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	4e-42	sequence-specific DNA binding transcription factors