PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487148.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family AP2
Protein Properties Length: 484aa    MW: 53513.3 Da    PI: 8.0451
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-17142191155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_004487148.1 142 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 191
                     78*******************......55************************998 PP
2AP2414.9e-13234284155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ k +g
  XP_004487148.1 234 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDKAAIKCNG 284
                     89********.7******...5...334336**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-9142191IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16142199IPR016177DNA-binding domain
CDDcd000182.74E-11143198No hitNo description
PROSITE profilePS5103217.82143199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-17143199IPR001471AP2/ERF domain
SMARTSM003803.0E-31143205IPR001471AP2/ERF domain
PfamPF008471.3E-8234284IPR001471AP2/ERF domain
CDDcd000182.45E-26234294No hitNo description
SuperFamilySSF541717.19E-17234293IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-16235292IPR001471AP2/ERF domain
SMARTSM003803.9E-33235298IPR001471AP2/ERF domain
PROSITE profilePS5103215.738235292IPR001471AP2/ERF domain
PRINTSPR003676.7E-6236247IPR001471AP2/ERF domain
PRINTSPR003676.7E-6274294IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MLDLNLNADS TQNDDSPVLF EKIPEASSGT SNSSIVNADA SSSGAGTGTG DEESGSTRAG  60
EAYTFNFGIL KVEDGNDVVA TKELFPVSVR NLQGQSLAMM FPTRKSEMDL TLDHHGGENG  120
IVQVQQRPQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR  180
AYDRAAIKFR GLDADINFNL VEYEEDMKQM KNLSKEEFVH ILRRHSNGFS RGSSKYRGVT  240
LHKCGRWEAR MGQLLGKKYI YLGLFDSEVE AARAYDKAAI KCNGRDAVTN FEPSTYENEM  300
KTESINEGGS DSHNLDLNLG IATPRHEPKE NRAYHQFQAV PHNMHLGRSS KMEIKANSVI  360
GDQSLKRMVV TEEHPSTWNH ATYSSFFSNE GRRAERIGID PSKGLPNWAW QAHGQGQGST  420
ASPVQQFSSA ASSGFSISAT FPSSSIFQTQ PLNSIPHTLC FAPSIAPGSY ASQYYYQVKS  480
SQAP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487148.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487148.10.0ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotB8AXC31e-104AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A1S2XES00.0A0A1S2XES0_CICAR; ethylene-responsive transcription factor RAP2-7-like isoform X1
STRINGXP_004487148.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-111related to AP2.7